PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB12G24630.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 579aa    MW: 61795 Da    PI: 6.6315
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB12G24630.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.69.1e-13222269355
                   HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    ahn  E++RR +i +++ +L++l+P +      K + +++Le++++Y++sLq
  OB12G24630.1 222 PAHNLTEKKRRFKITEKLRTLQRLVPGC-----DKCNQVSTLEQTIQYMRSLQ 269
                   69*************************9.....8******************9 PP
2HLH41.32.7e-13427473455
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   ahn  E+rRR +i +++ +L++l+P +      K + a++Le++++Y++sLq
  OB12G24630.1 427 AHNLSEKRRRVKISEKLKTLQRLVPGC-----DKSNQASTLEQTIQYMRSLQ 473
                   8*************************9.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.02E-15216276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-14218273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.37219268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.31E-11223273No hitNo description
PfamPF000101.9E-10223269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-11225274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-15422484IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.643423472IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-11427473IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-15427477IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.69E-12427477No hitNo description
SMARTSM003532.8E-12429478IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MNFQDPAPAG GFIVTDDDDN GETAAGGGGG AENHYLSNML RDFDYFTEDD LLELTWQGGG  60
GGGGGSSFGR PALSPVSYRR LSPEPAPPEI VPGRMLLPEQ PTLDDDHPAA PSEEEMAAWL  120
YPIVSGEVAG RRTEADDDVG RRAALPEMED TSGALTTTKM WGAVAHEKDK KRPVDFIFLR  180
KIIIIVSVRT LCTSLEQPYS DSLTMSPTQD AASDDSKKHR SPAHNLTEKK RRFKITEKLR  240
TLQRLVPGCD KCNQVSTLEQ TIQYMRSLQH QLKLTSVVAP PAALSPPHQD VDLFEFMGHQ  300
GGGGGGGGTS FEQPAAASSP EPAAPPEIVP AEPGMLLPEQ PPCDHPAAPS EEEMAAWLYP  360
IVCGGEAAGQ LAATDGGGRR GALPEMEGRP GTTTKDAASD VSGERKKHTS SAKAGARARS  420
SRNAAGAHNL SEKRRRVKIS EKLKTLQRLV PGCDKSNQAS TLEQTIQYMR SLQHQLKLIM  480
SVVAPPPALY PPQYLMPPAV TSSLTTVPMP AGMVLAAAPG PGAPPPPVMV PCMLPYPAVL  540
LPPPPPMYRP AEAAPGVPPA SRRHGYRSKN SSSSLRQKH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228233KKRRFK
2432436KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB12G24630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLJ3NEQ50.0J3NEQ5_ORYBR; Uncharacterized protein
STRINGOB12G24630.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62832452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28800.12e-14bHLH family protein