PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB12G24640.1
Common NameLOC102705400
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 220aa    MW: 23232.2 Da    PI: 9.6015
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB12G24640.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.69.1e-13113157655
                   HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    ++E+rRRd+iN+++  L++l+P +      K + a++L  ++++Ik+Lq
  OB12G24640.1 113 RAAEQRRRDKINEKLRALQRLVPFS-----NKSDQASTLDGVIQHIKYLQ 157
                   689*********************7.....59*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.32107156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.68E-16111171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-14113162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-10113157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.58E-14113161No hitNo description
Gene3DG3DSA:4.10.280.104.7E-15114165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MTTTSTAAAT ASSGGDTPQL TELPEASAVV VGAGEAEMAA WLRQVLEEGS APDRPADQPA  60
AGGIRTISSS DDVRGAVAAA GKMPVKEKQQ YHCPGCCRQP RSGGAGKRSG SGRAAEQRRR  120
DKINEKLRAL QRLVPFSNKS DQASTLDGVI QHIKYLQHQL QMMSNCSYST AVQPYLQPAG  180
GGGSVVAGRG WPPPPTTMLL RQQRQFVVPP PACRPPHHGD
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB12G24640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664710.11e-161PREDICTED: transcription factor ALC-like
TrEMBLJ3NEQ61e-159J3NEQ6_ORYBR; Uncharacterized protein
STRINGOB12G24640.11e-160(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62832452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.11e-13phytochrome interacting factor 3-like 5