PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB12G24760.1
Common NameLOC102707642
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 261aa    MW: 28128.7 Da    PI: 6.5328
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB12G24760.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.72.2e-1693142254
           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr...krfslgkfgtaeeAakaaiaarkkle 54 
                   +++GVr+++ +grW AeIrd      +   +r++lg+f++ae A  a++aa+++++
  OB12G24760.1  93 RIRGVRQRR-NGRWSAEIRDT-----TvlgARVWLGTFDSAEAAVLAYDAAARRIR 142
                   69****999.8*********4.....1234***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003808.0E-1993160IPR001471AP2/ERF domain
CDDcd000184.39E-1293128No hitNo description
PfamPF008471.5E-1093142IPR001471AP2/ERF domain
PROSITE profilePS5103217.96593154IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-1594143IPR016177DNA-binding domain
PRINTSPR003673.0E-694105IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-2095143IPR001471AP2/ERF domain
PRINTSPR003673.0E-6117133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MCGRRNGGVG GHPLPAVGDL RGRRRDDEQE QLKVVVVDSD SDDEHEEEMK LEEEFRRYCE  60
TGELQPLIPT KAVLKDHRSK KDKQPAPAAS KNRIRGVRQR RNGRWSAEIR DTTVLGARVW  120
LGTFDSAEAA VLAYDAAARR IRTGGNAKAK PSLPAPAAAS SNKMKKQPPV PAVPKKMKKP  180
VVPAAAEMVP GDGEPAGELA PVLLADALEA TDGWEFEPYY GMSLHGLQGG VYADDVPADE  240
LQGGGAGATV YAADYGCLWS F
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB12G24760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664718.20.0PREDICTED: dehydration-responsive element-binding protein 1B-like
TrEMBLJ3NER80.0J3NER8_ORYBR; Uncharacterized protein
STRINGOB12G24760.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156151014