PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB12G24770.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 178aa    MW: 19252.9 Da    PI: 10.2373
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB12G24770.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.37.9e-184291255
           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                  g++G++++k +grW+AeIrd+ +   +  r+++g+f+tae Aa a++aa+++++g
  OB12G24770.1 42 GFRGIHRRK-SGRWAAEIRDV-I---QgCRVWIGTFDTAEAAATAYDAAALAIHG 91
                  89****999.7*********5.2...35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.1924299IPR001471AP2/ERF domain
SMARTSM003803.2E-2542108IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-194299IPR016177DNA-binding domain
PfamPF008475.4E-124291IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.3E-264399IPR001471AP2/ERF domain
PRINTSPR003675.1E-74354IPR001471AP2/ERF domain
CDDcd000184.31E-124398No hitNo description
PRINTSPR003675.1E-76581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MVLPASRRPP APTAAAALQR GKNRRNKKKG KTGRRPAVSW HGFRGIHRRK SGRWAAEIRD  60
VIQGCRVWIG TFDTAEAAAT AYDAAALAIH GSKAKTNFHG YRATPPASLV QTKEPPAAEL  120
CYAAPSPVLL AHALEATQGW EFEPYIGVVH GLSLMDINYT YAAADEEQGA AAAGLWYF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-123398471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB12G24770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015698601.11e-104PREDICTED: ethylene-responsive transcription factor RAP2-3-like
TrEMBLJ3NER91e-127J3NER9_ORYBR; Uncharacterized protein
STRINGOB12G24770.11e-128(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156151014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.11e-14ERF family protein