PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB12G24920.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CPP
Protein Properties Length: 240aa    MW: 27221.9 Da    PI: 6.867
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB12G24920.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR47.53.4e-15641439
           TCR  4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39
                  ++C+Ckks ClkkYC+C++ g+ Cs +CkC+dCkN 
  OB12G24920.1  6 RKCTCKKSGCLKKYCDCYQGGAGCSINCKCDDCKNP 41
                  79*********************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163417.102143IPR005172CRC domain
SMARTSM011141.6E-12344IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.2E-11640IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MEFVRRKCTC KKSGCLKKYC DCYQGGAGCS INCKCDDCKN PYGRKVGVIL DGTKNILAGP  60
TPIERNGAEA DSSDDEEDDY YMNRPLSPVS PSPVSRESSF QQETLVGVEV QTMNGHLYPK  120
PLTQVRPESW QITRRPAEEV RGEAWRYLRR PSEDGTSDVM EGHADPKFQR DNKPPENHVH  180
VDRYSIPRCI EVMNAMADLS PIEKSLAPDI FLDASNREIF LSLTVDIRTM WLKRKMKSLV
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB12G24920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4067180.0CU406718.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C103K09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015698357.11e-180PREDICTED: protein tesmin/TSO1-like CXC 2, partial
TrEMBLJ3NET41e-180J3NET4_ORYBR; Uncharacterized protein
STRINGOB12G24920.11e-180(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP96102834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-18TESMIN/TSO1-like CXC 2