PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB12G25120.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 375aa    MW: 41385.3 Da    PI: 8.605
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB12G25120.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.21.4e-131762151155
                   HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   rRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  OB12G25120.1 176 RRRDRINEKMKALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 215
                   8******************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.799165214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-13171220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.9E-11176215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-16176223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.17E-13176219No hitNo description
SuperFamilySSF474596.94E-16176225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MGCHHRQLVN RPLRRLAALA AALCVVVAAT HGRGESSSPT VLRFLHQLAL LNSHSALVLA  60
QSQLASLPAL LTSSTSTHFT AHLISSQLSP AQLSSERVLQ VEDDGLIELL WCNGHVVMQS  120
QAPRKPPRPE KTAPAAAAVA EDESAAWFQY PVVDDVLEKD LFSELFGEMA AAGDVRRRDR  180
INEKMKALQE LIPHCNKTDK ASMLDEAIEY LKSLQLQLQM MWMGGGMAPP VMFPAAGVHQ  240
YMQRMGAVGM GPPHMASLPR MPPFMAPPAA VQSSPAVSMA DPYARCLAVD HLQPPSPMHY  300
LQGMSFYQLA TAKNLQQQQQ QNTAXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  360
XXRAGPPRRR RPCSH
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB12G25120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0667630.0AK066763.1 Oryza sativa Japonica Group cDNA clone:J013074J19, full insert sequence.
GenBankCT8297130.0CT829713.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA240D01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015698362.11e-138PREDICTED: transcription factor PIF4-like, partial
TrEMBLJ3NEV40.0J3NEV4_ORYBR; Uncharacterized protein
STRINGOB12G25120.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31073677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-16phytochrome interacting factor 3