PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB12G25370.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WOX
Protein Properties Length: 160aa    MW: 18085.1 Da    PI: 11.7876
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB12G25370.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.17.3e-0959952557
                  --HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
      Homeobox 25 psaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                  p  ++++ ++ +l    +++ ++V++WFqN++a +++
  OB12G25370.1 59 PPYRQKTAITVRLrehgHIEGKNVFYWFQNHKAHQRQ 95
                  56677888888889999****************9996 PP
2Wus_type_Homeobox58.22e-1957972565
  Wus_type_Homeobox 25 rtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       r P+ ++ + it +L+e+G+ie+kNVfyWFQN+ka +rqkq
       OB12G25370.1 57 RCPPYRQKTAITVRLREHGHIEGKNVFYWFQNHKAHQRQKQ 97
                       6799999********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.64E-557102IPR009057Homeodomain-like
PfamPF000462.0E-65995IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MLAPRPEIFS VLFFRRRKHI ARSPSRACAR SLAASPPSRA CRPVPCSGVR SPAYHRRCPP  60
YRQKTAITVR LREHGHIEGK NVFYWFQNHK AHQRQKQKQQ SFDYFSKLFR CPSSLPVLHR  120
PLVHPFPLTV PPAKPLPPSA PTACNTGGGG GEVKVLLLTF
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB12G25370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4902352e-33AM490235.1 Zea mays mRNA for putative wuschel homeobox protein (wox2A gene).
GenBankBT0370092e-33BT037009.1 Zea mays full-length cDNA clone ZM_BFb0151I01 mRNA, complete cds.
GenBankEU9540622e-33EU954062.1 Zea mays clone 1453569 homeobox domain containing protein mRNA, complete cds.
GenBankKJ7283842e-33KJ728384.1 Zea mays clone pUT6667 HB transcription factor (HB94) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006646469.11e-29PREDICTED: WUSCHEL-related homeobox 5-like, partial
TrEMBLJ3NEX91e-112J3NEX9_ORYBR; Uncharacterized protein
STRINGOB12G25370.11e-112(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75093548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.13e-08WUSCHEL related homeobox 2