PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB12G25740.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 239aa    MW: 25044.7 Da    PI: 5.1669
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB12G25740.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP59.81.1e-18413929119
           TCP  29 aarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssasec..eaesssssasnsssg....................... 88 
                   a++f+dLqd+LG+d++sk+ieWL+ +a  ai++l+++            +  ++  +   +++++s++++s+ +                       
  OB12G25740.1   4 AIQFYDLQDRLGYDQPSKAIEWLIGAAASAIDALPSLdcsfalpttassP--APA-SspPDDAEVSTSETSK-Ssvlslanapgdhgngtaynggga 96 
                   99*****************************************9886331..222.2333333333333333.336777788888889999999999 PP

           TCP  89 ............kaaksaakskksqksaasalnlakesrakar 119
                               ++ ++  ++++++++++++l++ + ++a + 
  OB12G25740.1  97 nggafaellhcsANGNKPLQHQHQHQQQQATLAYYAAQSAHMA 139
                   9999999998853333333555555555555666665544444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136918.926137IPR017887Transcription factor TCP subgroup
PfamPF036346.0E-174127IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
VSPAIQFYDL QDRLGYDQPS KAIEWLIGAA ASAIDALPSL DCSFALPTTA SSPAPASSPP  60
DDAEVSTSET SKSSVLSLAN APGDHGNGTA YNGGGANGGA FAELLHCSAN GNKPLQHQHQ  120
HQQQQATLAY YAAQSAHMAP MPFEMTMPQL AFTQEQQQHA TVAFERGTLQ SNAVAASLWP  180
PSTAQHPYLL QRFAAAPPEV AGLPFFLAGG GGGGATAPAT TNAGERRLQL WDFKEERKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A6e-141381855Putative transcription factor PCF6
5zkt_B6e-141381855Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB12G25740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0718081e-72AB071808.1 Oryza sativa Japonica Group mRNA for transcription factor PCF8, partial cds.
GenBankAK1068301e-72AK106830.1 Oryza sativa Japonica Group cDNA clone:002-116-F07, full insert sequence.
GenBankAP0149681e-72AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankBX0004571e-72BX000457.2 Oryza sativa chromosome 12, . BAC OJ1388_B05 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankCP0126201e-72CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664747.21e-174PREDICTED: transcription factor PCF8
SwissprotA2ZMR95e-76PCF8_ORYSI; Transcription factor PCF8
TrEMBLJ3NF161e-173J3NF16_ORYBR; Uncharacterized protein
STRINGOB12G25740.11e-174(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115532638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.22e-15TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2