PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB12G26050.1
Common NameLOC102705487
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family YABBY
Protein Properties Length: 209aa    MW: 23053.1 Da    PI: 9.0427
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB12G26050.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY233.54.8e-7261795170
         YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaes.hldeslkee......lleelkveeenlksnvekeesast 94 
                     +e+vCyv+CnfCntilavsvP +s++++vtvrCGhCt+llsvnl+  ++  +a + h +++l+e+      + ++++  e  l+   ++++   +
  OB12G26050.1   6 APAEHVCYVHCNFCNTILAVSVPGNSMLNIVTVRCGHCTNLLSVNLRGLMHSAPALQdHHHHHLQENnvsgcfVRDQNGYPEFGLSGASSSSKLRLQ 102
                   5689**********************************************99998651545555555777765555555555444444444444333 PP

         YABBY  95 s.vsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                      ++ ++s +++++   +    rPPekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWah+P+ihfgl
  OB12G26050.1 103 PpAAAAMVSYSQQNQQLDQALHARPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGL 179
                   31334455777776666666679****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.7E-737179IPR006780YABBY protein
SuperFamilySSF470953.27E-8124173IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.4E-5126173IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MSAQIAPAEH VCYVHCNFCN TILAVSVPGN SMLNIVTVRC GHCTNLLSVN LRGLMHSAPA  60
LQDHHHHHLQ ENNVSGCFVR DQNGYPEFGL SGASSSSKLR LQPPAAAAMV SYSQQNQQLD  120
QALHARPPEK RQRVPSAYNR FIKEEIRRIK ANNPDISHRE AFSTAAKNWA HYPNIHFGLS  180
PGHEGSKKLV DVDAIPTAPS SKKIQGFYS
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB12G26050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2740180.0AB274018.1 Oryza sativa Japonica Group OsYABBY6 mRNA for OsYABBY6 protein, complete cds.
GenBankAK1049180.0AK104918.1 Oryza sativa Japonica Group cDNA clone:001-047-F07, full insert sequence.
GenBankCT8291390.0CT829139.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA051K22, full insert sequence.
GenBankFJ9401950.0FJ940195.1 Oryza sativa Japonica Group clone KCS385G10 YABBY protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664216.11e-156PREDICTED: protein YABBY 6
SwissprotQ2QM171e-135YAB6_ORYSJ; Protein YABBY 6
TrEMBLJ3NF471e-155J3NF47_ORYBR; Uncharacterized protein
STRINGOB12G26050.11e-155(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139437121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.23e-58YABBY family protein