PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G00200.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YC
Protein Properties Length: 425aa    MW: 46867.9 Da    PI: 4.782
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G00200.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC84.98.6e-2721121198
            NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 
                      q+  fw ++   ie+++df +h++P+ar+kki  +++   m++ + P++lsk celf+ el++r+w  a++ +r  +  +di++a+++t+ +df
  OBART01G00200.1  21 QMDEFWRDRqkeIETTKDFSEHAIPMARLKKIASSQKGNMMMTFDMPAFLSKMCELFVQELAVRAWASAQSHNRCIILDTDITEAIASTESYDF 114
                      68899*765566********************************************************************************** PP

            NF-YC  92 lvdivpr 98 
                      lvdi  +
  OBART01G00200.1 115 LVDILHN 121
                      ***9866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF001252.6E-826106IPR007125Histone H2A/H2B/H3
SuperFamilySSF471131.52E-1528120IPR009072Histone-fold
Gene3DG3DSA:1.10.20.107.0E-1845119IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MEQTLDVPRS LRLPTLKAQQ QMDEFWRDRQ KEIETTKDFS EHAIPMARLK KIASSQKGNM  60
MMTFDMPAFL SKMCELFVQE LAVRAWASAQ SHNRCIILDT DITEAIASTE SYDFLVDILH  120
NHREKHKSTP CSTLTTKRCR LVDQPSTSRP PYQHQLPLFA PTYTPAIPIT PSLMPPVSHY  180
IPFQYPSLSQ EVSTMMASAP IVNRSMLLIH NIARGLGLQG NNISTFANNN IPDNIIGCSS  240
PAVLASMMSP ALLDVARASL NPPNSHSICM MNMINSSNPS GSSIGDINVA NQASLAPSGH  300
FNPAILQESS CPSFLYNNNN DTTVVVPESV DISGTMDVAS DVAGIVINGQ EEEHERETNV  360
EQNEIYESID IGIINASVAD GNKCSIRWDE LGTADDSLLD KFLEEFQARN DGVLHSGIVL  420
HEDHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B2e-1731119593NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2422260.0AK242226.1 Oryza sativa Japonica Group cDNA, clone: J075175B02, full insert sequence.
GenBankAP0029690.0AP002969.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0455C04.
GenBankAP0036100.0AP003610.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0402A09.
GenBankAP0037270.0AP003727.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0672D08.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622450.10.0uncharacterized protein LOC4326467 isoform X1
RefseqXP_015622453.10.0uncharacterized protein LOC4326467 isoform X3
TrEMBLA0A0D3EIK90.0A0A0D3EIK9_9ORYZ; Uncharacterized protein
STRINGOBART01G00200.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91742145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.25e-22nuclear factor Y, subunit C4