PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G00330.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 246aa    MW: 27670.6 Da    PI: 4.8412
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G00330.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM76.84.9e-242395172
              NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgk 72
                     lppGfrFhPtdeel+ +yL k++++ ++++  vi+evdiyk++Pw+Lp +  + +++ ewyfFs+rd+ky++g 
  OBART01G00330.1 23 LPPGFRFHPTDEELLLHYLGKRAAAAPCPA-PVIAEVDIYKYNPWELPaMaVFGESDGEWYFFSPRDRKYPNGL 95
                     79***************************9.89***************5334455666*************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-2917106IPR003441NAC domain
PROSITE profilePS5100522.60323175IPR003441NAC domain
PfamPF023657.5E-112495IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009825Biological Processmultidimensional cell growth
GO:0009835Biological Processfruit ripening
GO:0009908Biological Processflower development
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MTIDLQLPAA ACGDHHTAAG AGLPPGFRFH PTDEELLLHY LGKRAAAAPC PAPVIAEVDI  60
YKYNPWELPA MAVFGESDGE WYFFSPRDRK YPNGLDEWVL CRIYKKKEAN QQLQHYIDMM  120
MDDDNDDEHN LQVQQQAQSH RMPRPPSISD YLLDYSDDLP PSTDQTPSLH LGFTAVNEGN  180
NNNNKRHKTM EEYYSISIST AEMLHASSST SNNKSTRINF SSIFEPQTPA AAGHQLMSSH  240
NDDTSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-2923941584Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621004.11e-73NAC transcription factor 29
TrEMBLA0A0D3EIN20.0A0A0D3EIN2_9ORYZ; Uncharacterized protein
STRINGOBART01G00330.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123736123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.15e-31NAC family protein