PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G00600.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 227aa    MW: 24644.8 Da    PI: 9.9665
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G00600.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.7e-083285554
                     HHHHHHHHHHHHHHHHHHHHCTSCC.C......TTS-STCHHHHHHHHHHHHHH CS
              HLH  5 hnerErrRRdriNsafeeLrellPk.as...kapskKlsKaeiLekAveYIksL 54
                      +e+ErrRR++++    +L +l+P+  +   k ++   +    L +A  YIk+L
  OBART01G00600.1 32 RKEMERRRRQDMKGLCVKLASLIPNeHCsksKMQGATRTQLGSLDEAAAYIKKL 85
                     579**********************66699888888899*************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.2452785IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-113198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-53385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.68E-1033102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-63391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MDQEKADGGG RRRRSRATRS SGSGASSTAA ERKEMERRRR QDMKGLCVKL ASLIPNEHCS  60
KSKMQGATRT QLGSLDEAAA YIKKLKERVD ELHHKRSMMS ITSSRCRSGG GVPAAAAGQS  120
TSGGGGEEEE DMTRTTAAAA VVEVRQHVQE GSLISLDVVL ICSAARPVKF HDVITVLEEE  180
GADIISANFS LAAHNFYYTI YSRAFSSRIG IEASRISERL RALVIRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647782.11e-111transcription factor bHLH167 isoform X2
TrEMBLA0A0D3EIR11e-162A0A0D3EIR1_9ORYZ; Uncharacterized protein
STRINGOBART01G00600.11e-163(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82936133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10586.12e-14bHLH family protein