PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G02610.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family RAV
Protein Properties Length: 325aa    MW: 36153.4 Da    PI: 6.4201
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G02610.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.14.5e-1368116155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+ykGV   + +grW A+I++      r +r++lg+f  +e Aa+a++ a+++++g
  OBART01G02610.1  68 SRYKGVVPQP-NGRWGAQIYE------RhARVWLGTFPDEEAAARAYDVAALRFRG 116
                      78****9888.8*********......44*************************98 PP
2B391.18.2e-29181274185
                      EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                      f+k+ tpsdv+k++rlv+pk+ ae+h         +    +++ l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL+ gD+v F+++
  OBART01G02610.1 181 FEKAVTPSDVGKLNRLVVPKQQAERHfpfplrrhsSDAAGKGVLLNFEDGDGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLRPGDTVAFSRS 274
                      89*****************************999855667999************************************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.8E-868116IPR001471AP2/ERF domain
CDDcd000182.76E-1368122No hitNo description
SuperFamilySSF541715.82E-1668122IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.0E-1969122IPR001471AP2/ERF domain
PROSITE profilePS5103221.07469124IPR001471AP2/ERF domain
SMARTSM003809.2E-2469130IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.4E-37177294IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-29178290IPR015300DNA-binding pseudobarrel domain
CDDcd100172.54E-28179274No hitNo description
PROSITE profilePS5086313.394181290IPR003340B3 DNA binding domain
SMARTSM010197.1E-20181291IPR003340B3 DNA binding domain
PfamPF023628.1E-26181275IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MEQEAAMVVF SCNSGSGGSS STTDSKQEEE EEEEEEELAA MEEDELIHVV QAAELRLPSS  60
TTATRPSSRY KGVVPQPNGR WGAQIYERHA RVWLGTFPDE EAAARAYDVA ALRFRGRDAV  120
TNRAPAAEGA SAGELAFLAA HSKAEVVDML RKHTYDDELQ QGLRRGSRAQ PTPRWAREPL  180
FEKAVTPSDV GKLNRLVVPK QQAERHFPFP LRRHSSDAAG KGVLLNFEDG DGKVWRFRYS  240
YWNSSQSYVL TKGWSRFVRE KGLRPGDTVA FSRSAAAWGT EKHLLIDCKK MERNNLATVD  300
AIAVDDDARV VVKLFGVDIA GDKTR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-4817829611122DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2116060.0AC211606.1 Oryza glaberrima clone OG_BBa0048H17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878463.10.0putative AP2/ERF and B3 domain-containing protein Os01g0140700
SwissprotQ9AWS70.0Y1407_ORYSJ; Putative AP2/ERF and B3 domain-containing protein Os01g0140700
TrEMBLA0A0D3EJF10.0A0A0D3EJF1_9ORYZ; Uncharacterized protein
STRINGOBART01G02610.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.22e-92related to ABI3/VP1 2