PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G03950.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 258aa    MW: 28297.6 Da    PI: 9.9178
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G03950.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.38.7e-1169113554
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h+e+ErrRR+riN  + +Lr+++P       k ++Ka+ L ++v+ +k+L
  OBART01G03950.1  69 HSEAERRRRERINAHLTTLRRMIPDT-----KQMDKATLLARVVDQVKDL 113
                      9************************9.....67***********999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-1355122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.76164113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.9E-1368123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-869113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-1170119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516719.04159237IPR002912ACT domain
Gene3DG3DSA:3.30.70.2605.6E-6161223No hitNo description
SuperFamilySSF550213.36E-5161221No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MAECQPLQLQ EGKKLQELQP YDGCNPSVYR GPILLPRQAN SAPPAVPPEM SSSSGSGRSA  60
TEARALKIHS EAERRRRERI NAHLTTLRRM IPDTKQMDKA TLLARVVDQV KDLKRKASEI  120
TQRTPLPPET NEVSIECFTG DAAAAATAVA GNHKTLYIKA SISCDDRPDL IAGITHAFHG  180
LRLRMVRAEM TSLGGRVQHV FILCREEGIA GGVSLKSLKE AVRQALAKVA SPELVYGSSH  240
FQSKRQRILE SHCSIMSI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17277ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8315680.0CT831568.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRN107N12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623162.10.0putative transcription factor bHLH107
TrEMBLA0A0D3EJV70.0A0A0D3EJV7_9ORYZ; Uncharacterized protein
STRINGOBART01G03950.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33473678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.11e-27bHLH family protein