PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G04790.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 200aa    MW: 20197.7 Da    PI: 8.9849
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G04790.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1217.5e-071231661962
                      HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1  19 rsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                      r R+RKka++ eLe k+k Le  N +L +++++l++e  +l++ 
  OBART01G04790.1 123 RARERKKAYMTELEAKAKDLELRNAELEQRVSTLQNENNTLRQI 166
                      88*************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003380.006299169IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.5E-8120167No hitNo description
PROSITE profilePS502178.967120170IPR004827Basic-leucine zipper domain
PfamPF077166.4E-5123159IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.9E-11123169No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MAAQEQEQEK QQAKTSTTSS LPSSSERSSS SAPNNLKEGG GVESDEEIRR VPEMGGGGGS  60
ASSGAGADER QGKEDGKQQG GGGGGGGAAA GGGQGAGAAG EEARAERRRQ GAEPAEAAAA  120
EPRARERKKA YMTELEAKAK DLELRNAELE QRVSTLQNEN NTLRQILKNT TAHAGKRGGG  180
GGGKGGDGGG GGKKHHFTKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181189GGKGGDGGG
2183192KGGDGGGGGK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
GenBankCT8348910.0CT834891.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA106L05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008655674.12e-49transcription factor HY5
RefseqXP_025815107.13e-49transcription factor HY5-like
RefseqXP_025815108.13e-49transcription factor HY5-like
TrEMBLA0A0D3EK591e-132A0A0D3EK59_9ORYZ; Uncharacterized protein
STRINGOBART01G04790.11e-133(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140838111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11260.14e-12bZIP family protein