PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G05390.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 198aa    MW: 22628.8 Da    PI: 10.871
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G05390.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.91.9e-323189159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY  1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                     ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+
  OBART01G05390.1 31 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHS 89
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-331689IPR003657WRKY domain
SuperFamilySSF1182908.37E-292390IPR003657WRKY domain
PROSITE profilePS5081129.3562691IPR003657WRKY domain
SMARTSM007749.8E-373190IPR003657WRKY domain
PfamPF031062.6E-253288IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901141Biological Processregulation of lignin biosynthetic process
GO:1904369Biological Processpositive regulation of sclerenchyma cell differentiation
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MKKVGGGGGK ARRKVREPRF CFKTMSDVDV LDDGYKWRKY GQKVVKNTQH PRSYYRCTQD  60
NCRVKKRVER LAEDPRMVIT TYEGRHVHSP SRDDDDAARA SAEMTFICPL NRSNAVAIHP  120
RIPLTAARST RGERGRLWAV RCGSDFPLRS TARETRSREN INSSDLMDLS AIAIAHCIST  180
KQPNHKVGAS RERKKERQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-272288874Probable WRKY transcription factor 4
2lex_A6e-272288874Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3418530.0AY341853.1 Oryza sativa (japonica cultivar-group) WRKY12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818604.11e-66probable WRKY transcription factor 13
SwissprotQ9SVB79e-53WRK13_ARATH; Probable WRKY transcription factor 13
TrEMBLA0A0D3EKE11e-145A0A0D3EKE1_9ORYZ; Uncharacterized protein
STRINGOBART01G05390.11e-146(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113838130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.12e-48WRKY DNA-binding protein 13