PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G06120.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 438aa    MW: 46115.6 Da    PI: 7.0071
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G06120.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.71.8e-12335381455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h + Er+RR+++N++f  L+ +lP+       K +K +iL +A eY+ksL+
  OBART01G06120.1 335 QHTMSERKRREKLNDSFVALKAVLPPG-----SKKDKTSILIRAREYVKSLE 381
                      599**********************95.....4999**************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.42E-14329385No hitNo description
PROSITE profilePS5088814.665331380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-16331398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-13334379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.3E-10335381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-13337386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:1.20.5.1701.1E-4380400No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MDDDDDQSAV YGAAMVDDLL MPSPSTHHAV AAAAGSFPSS SSSSPSFRSA SVSYSPDTSS  60
SAAAAAATGF YPELSLQVAP LLPPPPLVRN EPQHGRYTAA LPPPPVTGGP FRRYARHLGP  120
RRAPKPGACG QRMFKTAMSA LAKMHMETTY RRRHWIHGYT NANATGANSG FMCGYAACSP  180
VEFPQQQQLI SMQMGMDDES AVYDGASMVD DLLMPSSSAH HHAAAGSFQY SSLTSSSASF  240
RSASPGELGG GDRVAGGAAG AVRGGGGVPL PGGLLAGAVA TTLAALRAAA RPIHHRPLAA  300
AAGARVAGDY YAGDYQQAAA AEAAPPPLSG NNQLQHTMSE RKRREKLNDS FVALKAVLPP  360
GSKKDKTSIL IRAREYVKSL ESKLSELEEK NRELEARLST RPDDTKNDEE AAAPPEADGE  420
VKREDPVEIE ALDKFFIR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1339344ERKRRE
2340345RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0034170.0AP003417.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0498B01.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D3EKN00.0A0A0D3EKN0_9ORYZ; Uncharacterized protein
STRINGOBART01G06120.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.14e-13bHLH family protein