PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART01G06400.5

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HD-ZIP

Protein Properties

Length: 835aa MW: 90384.7 Da PI: 6.678

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART01G06400.5	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.8	8.9e-19	12	70	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ OBART01G06400.5 12 KYVRYTPEQVEALERLYYECPKPSSLRRQQLVRECpalaNVDPKQIKVWFQNRRCREKQ 70 6789*****************************************************97 PP
2	START	58.7	1.8e-19	179	275	2	97
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galql 93 +aee+++e+++ka+ ++ W +++ +++g++++ +++ s+++ g a+ra+g+v m++a v+e+l+d++ W ++++++++++v+ g g+++l OBART01G06400.5 179 IAEETLTEFLSKATGTAVEWLQMPGMKPGPDSIGIIAISHGCAGVAARACGLVGMEPA-KVAEILKDRPLWLRDCRSMDVVNVLPAGanGTIEL 271 789*****************************************************.8888888888****************9955554 PP EEEX CS START 94 mvae 97 +++ OBART01G06400.5 272 LYMQ 275 4433 PP
3	START	90.7	2.9e-29	300	409	97	202
XXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHH CS START 97 elqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvk 186 +l+a+++l+p Rdf+ +Ry+ l +g++v++++S++s+q p+ ++++R+e+lpSg+li+p+++g+s +++v+h+dl+ +++++++r+l++ OBART01G06400.5 300 QLYAPTTLAPaRDFWLLRYTSILDDGSLVVCERSLSSKQGGPSmplVQPFIRGEMLPSGFLIRPSDGGGSVIHIVDHMDLEPWSVPEVVRPLYE 393 789*************************************999999****************************************** PP HHHHHHHHHHHHHTXX CS START 187 sglaegaktwvatlqr 202 s+++ ++k+ +a ++ OBART01G06400.5 394 SSAMVAQKISMALCKI 409 *********99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.532	7	71	IPR001356	Homeobox domain
SMART	SM00389	6.9E-15	9	75	IPR001356	Homeobox domain
CDD	cd00086	3.71E-16	12	72	No hit	No description
Pfam	PF00046	2.2E-16	12	70	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.13E-17	13	73	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.9E-18	14	70	IPR009057	Homeodomain-like
CDD	cd14686	4.07E-6	64	103	No hit	No description
PROSITE profile	PS50848	22.741	169	395	IPR002913	START domain
SuperFamily	SSF55961	1.18E-31	170	266	No hit	No description
CDD	cd08875	4.39E-66	173	417	No hit	No description
Gene3D	G3DSA:3.30.530.20	2.8E-17	176	388	IPR023393	START-like domain
SMART	SM00234	4.2E-32	178	413	IPR002913	START domain
Pfam	PF01852	1.1E-16	179	275	IPR002913	START domain
SuperFamily	SSF55961	1.18E-31	296	392	No hit	No description
Pfam	PF01852	2.7E-26	300	408	IPR002913	START domain
Pfam	PF08670	4.2E-49	689	834	IPR013978	MEKHLA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 835 aa Download sequence Send to blast
MVASAAAMDA SKYVRYTPEQ VEALERLYYE CPKPSSLRRQ QLVRECPALA NVDPKQIKVW 60 FQNRRCREKQ RKESSRLQAL NRKLTAMNKL LMEENDRLQK QVSQLVYDHG RHGVAAAGMM 120 RRVPAFPPQA AAAAGHQLAT ATDTSCESVV TSGHHHQQQQ HNVVQPPPRD ASPAGLMSIA 180 EETLTEFLSK ATGTAVEWLQ MPGMKPGPDS IGIIAISHGC AGVAARACGL VGMEPAKVAE 240 ILKDRPLWLR DCRSMDVVNV LPAGANGTIE LLYMQARTHK PENSEPEPEI LKLKFVFDLQ 300 LYAPTTLAPA RDFWLLRYTS ILDDGSLVVC ERSLSSKQGG PSMPLVQPFI RGEMLPSGFL 360 IRPSDGGGSV IHIVDHMDLE PWSVPEVVRP LYESSAMVAQ KISMALCKIQ ALRYLRQVAH 420 EDTRSVITGW GRQPAALRAL SQKLTRGFNE ALNGLADDGW SVIESDGVDD VCISVNSSKV 480 IGCNATFSSG LPIVSTGVLC AKASMLLQFL EVIKLGNASN YQDTLVHRDL FLLQMYNGVE 540 ESSAGTCSEL IFAPIDASFS DDSPLLPSGF RIIPIDSPLD TSSPNCTLDL ASTLEAATPR 600 SRISGVNGGG GCAAAAASSS SKAVMTIAFQ FAFDGHLQDS VAAMARQYMR NIISSVQRIA 660 VALSSSRLVP PGAAAAAAQL SPVTPEAATL PRWICQSYRF HFGAELIKSV DANSSNESIL 720 KAVWHHPSAI LCCSLKAMPV FTFANQSGLD MLETTLVALQ DMTPEKVFDD QGRKNLCTEL 780 PNIMEQGMAC MEGGVCVSSV GRAASYEKAV AWKVVDGDGG GAHCICFMFI NWTFL

Sequence ? help Back to Top

Protein Sequence Length: 835 aa Download sequence Send to blast

MVASAAAMDA SKYVRYTPEQ VEALERLYYE CPKPSSLRRQ QLVRECPALA NVDPKQIKVW  60
FQNRRCREKQ RKESSRLQAL NRKLTAMNKL LMEENDRLQK QVSQLVYDHG RHGVAAAGMM  120
RRVPAFPPQA AAAAGHQLAT ATDTSCESVV TSGHHHQQQQ HNVVQPPPRD ASPAGLMSIA  180
EETLTEFLSK ATGTAVEWLQ MPGMKPGPDS IGIIAISHGC AGVAARACGL VGMEPAKVAE  240
ILKDRPLWLR DCRSMDVVNV LPAGANGTIE LLYMQARTHK PENSEPEPEI LKLKFVFDLQ  300
LYAPTTLAPA RDFWLLRYTS ILDDGSLVVC ERSLSSKQGG PSMPLVQPFI RGEMLPSGFL  360
IRPSDGGGSV IHIVDHMDLE PWSVPEVVRP LYESSAMVAQ KISMALCKIQ ALRYLRQVAH  420
EDTRSVITGW GRQPAALRAL SQKLTRGFNE ALNGLADDGW SVIESDGVDD VCISVNSSKV  480
IGCNATFSSG LPIVSTGVLC AKASMLLQFL EVIKLGNASN YQDTLVHRDL FLLQMYNGVE  540
ESSAGTCSEL IFAPIDASFS DDSPLLPSGF RIIPIDSPLD TSSPNCTLDL ASTLEAATPR  600
SRISGVNGGG GCAAAAASSS SKAVMTIAFQ FAFDGHLQDS VAAMARQYMR NIISSVQRIA  660
VALSSSRLVP PGAAAAAAQL SPVTPEAATL PRWICQSYRF HFGAELIKSV DANSSNESIL  720
KAVWHHPSAI LCCSLKAMPV FTFANQSGLD MLETTLVALQ DMTPEKVFDD QGRKNLCTEL  780
PNIMEQGMAC MEGGVCVSSV GRAASYEKAV AWKVVDGDGG GAHCICFMFI NWTFL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269\|PubMed:15598805, ECO:0000269\|PubMed:15705957, ECO:0000269\|PubMed:16617092}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269\|PubMed:15773855, ECO:0000269\|PubMed:16033795, ECO:0000269\|PubMed:16617092, ECO:0000269\|PubMed:17237362}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB374207	0.0	AB374207.1 Oryza sativa Japonica Group OSHB5 mRNA for class III homeodomain-leucine zipper protein, complete cds.
GenBank	AK112091	0.0	AK112091.1 Oryza sativa Japonica Group cDNA clone:002-107-A01, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025816436.1	0.0	homeobox-leucine zipper protein HOX29-like
Swissprot	Q9ZU11	0.0	ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBL	A0A0D3EKS2	0.0	A0A0D3EKS2_9ORYZ; Uncharacterized protein
STRING	LPERR01G06020.3	0.0	(Leersia perrieri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52150.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684]