PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G06430.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 249aa    MW: 26839.6 Da    PI: 4.5578
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G06430.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.4e-20102151356
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr+++ +grW++eIrdp+    + +r++lg+f+ta eAa+a++a +++++g+
  OBART01G06430.1 102 YRGVRQRP-WGRWASEIRDPV----KgARVWLGTFDTAVEAARAYDAEARRIHGH 151
                      9*******.**********75....44**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.787101158IPR001471AP2/ERF domain
SMARTSM003801.9E-37101164IPR001471AP2/ERF domain
PRINTSPR003672.6E-11102113IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-22102159IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-31102158IPR001471AP2/ERF domain
PfamPF008476.5E-12102151IPR001471AP2/ERF domain
CDDcd000182.22E-27104157No hitNo description
PRINTSPR003672.6E-11124140IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MCGGALIPND YGDKPPPPPS ESSEWDATTK MKKKKKRGGG GDDDWEAAFR EFIAGDDDDD  60
DGGVSMFPSG AGTMETTTEV APAAAVVERP RRRRRVRRSY PYRGVRQRPW GRWASEIRDP  120
VKGARVWLGT FDTAVEAARA YDAEARRIHG HKARTNFPPD EPPLPAPSQA PFCFLLDDDD  180
DDGVARGNSP ASSSAPDSAS ACTTSSTVAS GERGDELILL ECCSDDVMDS LLAGFDVSSE  240
PRSVLGMVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-19102158663ATERF1
3gcc_A9e-19102158663ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18896RPRRRRRVR
29097RRRRRVRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU4294430.0EU429443.1 Oryza nivara strain IRRI-IRGC-101524 submergence-1B mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610635.11e-118ethylene-responsive transcription factor 1-like
TrEMBLA0A0D3EKS51e-179A0A0D3EKS5_9ORYZ; Uncharacterized protein
STRINGOBART01G06430.11e-180(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP152001318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.13e-19ERF family protein