PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G06440.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 229aa    MW: 24655.5 Da    PI: 6.3062
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G06440.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.27.5e-174694355
              AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     y+GVr +  +g+Wv+eIr+p++   + r++lg+f  +e+Aa+a++ a+++++g
  OBART01G06440.1 46 YRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPCPEMAARAHDVAALSIKG 94
                     9****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.4E-3445108IPR001471AP2/ERF domain
PROSITE profilePS5103222.845102IPR001471AP2/ERF domain
PRINTSPR003672.8E-94657IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-3046103IPR001471AP2/ERF domain
CDDcd000182.77E-2946104No hitNo description
PfamPF008479.8E-124694IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-2046103IPR016177DNA-binding domain
PRINTSPR003672.8E-96884IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MAASEQSSES SSTASTSSCG KKQQVAGKRK REDVGGGGEQ AAAVAYRGVR MRAWGKWVSE  60
IREPRKKSRI WLGTFPCPEM AARAHDVAAL SIKGARAVLN FPDLAPALPR PASLAPRDVQ  120
AAAALAAVMY HHKHPSSSTS TSSPPAAPPP DEHHPRHEPQ QPESSREDDQ QQQPAAAAAA  180
AQMAVAELVF DELAPLWVED VVEFGTSDHC WTAYDALDPI GFQPLLWEY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1733102272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1088730.0AK108873.1 Oryza sativa Japonica Group cDNA clone:002-152-C11, full insert sequence.
GenBankAP0031970.0AP003197.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1015E06.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAY3393740.0AY339374.1 Oryza sativa (japonica cultivar-group) Ap21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644400.11e-119ethylene-responsive transcription factor TINY
SwissprotQ9LYD35e-44DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A0D3EKS61e-165A0A0D3EKS6_9ORYZ; Uncharacterized protein
TrEMBLI1NL701e-165I1NL70_ORYGL; Uncharacterized protein
STRINGORGLA01G0061000.11e-165(Oryza glaberrima)
STRINGOBART01G06440.11e-165(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.14e-31ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]