PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G08110.2
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 959aa    MW: 104762 Da    PI: 4.9715
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G08110.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.87.1e-1566105848
                      HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      Ede++v+ v++lG++ W+tIa+ ++ gR +kqc++rw+++l
  OBART01G08110.2  66 EDEIIVQMVNKLGPKKWSTIAQALP-GRIGKQCRERWYNHL 105
                      9************************.*************97 PP
2Myb_DNA-binding48.61.9e-15111153145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +WT+eE+  l++a++++G++ W+   + ++ gRt++++k++w+
  OBART01G08110.2 111 KEAWTQEEEITLIHAHRMYGNK-WAELTKFLP-GRTDNSIKNHWN 153
                      579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.22756105IPR017930Myb domain
SMARTSM007173.0E-1058107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-2266112IPR009057Homeodomain-like
PfamPF002491.5E-1266105IPR001005SANT/Myb domain
CDDcd001673.81E-1266105No hitNo description
SuperFamilySSF466891.46E-2785162IPR009057Homeodomain-like
PROSITE profilePS5129424.107106160IPR017930Myb domain
SMARTSM007172.2E-14110158IPR001005SANT/Myb domain
PfamPF002496.2E-14111154IPR001005SANT/Myb domain
CDDcd001673.96E-11113153No hitNo description
Gene3DG3DSA:1.10.10.601.1E-21113160IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032875Biological Processregulation of DNA endoreduplication
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 959 aa     Download sequence    Send to blast
MESLLDLRRL LKKEKSAMNQ KGDDLSMGGP PVRHGVPPKE IGPLKRMPYC PQLFRHTTGR  60
TGKKLEDEII VQMVNKLGPK KWSTIAQALP GRIGKQCRER WYNHLNPGIN KEAWTQEEEI  120
TLIHAHRMYG NKWAELTKFL PGRTDNSIKN HWNSSVKKKV NSYMSSGLLT QVSCLPLNEY  180
SANCNSSPAM TQQNSEDSGC FAVREVENSS GCSQSSLAKV SCSQVHDTTV PLGCDLQVNA  240
NFDKNEAHDS QSSMGPQACY TSAEAVASAL PAVHCHVSSS NLDPDQHLQE DFAQGLNLDM  300
TIDEMPTVPS VADNQTVCSI ENHERSLEPY DVAMEVPLSM LSSDSGAEQK LHFMSEADFN  360
SPNCLKSELW QDISLQGLLS GPDAVEADSF SRSNHQLDVY SSEADTHFLA PPYMPQTSNS  420
SSVMGLADDQ SPQMSVPPSL ICSNAMTDDA PFDNRPGRKE MPLSQAEVVT QSSSSSGDAE  480
MFANPGCSND RHVPSSTMES IPECGDQQVT NAEEPEASLE KEPSLTQSVT APDEQDKGAL  540
YYEPPRFPSL DVPFVSCDLV TSGDLQEFSP LGIRQLMHST MNVCTPMRLW GSPTHDESTG  600
VLLKSAAKSF ICTPSILKKR HRDLLSPIPD KRIEKKYGTE KDRGVSDTSS TGIQTSCINA  660
TKDDALITTV LRIERSASSK SLEKKLVFSD ENKENLGYTT EQTKDGKSAG NDEHMDEQTT  720
GERSSATNVA TNADLSGNLQ PAGILIEHSG DDPISSDYGK NTMNQKLNTN VKSLSVCKEG  780
VCAKSKPTEL IVEKSSPCIN VDYEYVNILA DTPGIKRGLE SPSAWKSPWF VDMHFQGSYF  840
TSPADSYDAL GLMKQINVQT AAALVEAREV LASGGQCDNI SSDKENTGNP DAKKEPGTTK  900
LQTKIMAEGR VLDFECTTPV RSSDKNAGSN LGRYLSSPIP SSHLLKSEDF SRLFTRKVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-40641609105C-Myb DNA-Binding Domain
1msf_C3e-40641609105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00505DAPTransfer from AT5G11510Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3186010.0AK318601.1 Oryza sativa Japonica Group cDNA, clone: J100066E24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625869.10.0transcription factor MYB3R-1
TrEMBLA0A0D3ELC50.0A0A0D3ELC5_9ORYZ; Uncharacterized protein
STRINGORGLA01G0073200.10.0(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.13e-89myb domain protein 3r-4