PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART01G08110.3

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 944aa MW: 103402 Da PI: 5.0358

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART01G08110.3	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.8	6.9e-15	66	105	8	48
HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 Ede++v+ v++lG++ W+tIa+ ++ gR +kqc++rw+++l OBART01G08110.3 66 EDEIIVQMVNKLGPKKWSTIAQALP-GRIGKQCRERWYNHL 105 9**********************.***********97 PP
2	Myb_DNA-binding	48.6	1.9e-15	111	153	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE+ l++a++++G++ W+ + ++ gRt++++k++w+ OBART01G08110.3 111 KEAWTQEEEITLIHAHRMYGNK-WAELTKFLP-GRTDNSIKNHWN 153 579*****************.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.227	56	105	IPR017930	Myb domain
SMART	SM00717	3.0E-10	58	107	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.9E-22	66	112	IPR009057	Homeodomain-like
CDD	cd00167	3.73E-12	66	105	No hit	No description
Pfam	PF00249	1.5E-12	66	105	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.46E-27	85	162	IPR009057	Homeodomain-like
PROSITE profile	PS51294	24.107	106	160	IPR017930	Myb domain
SMART	SM00717	2.2E-14	110	158	IPR001005	SANT/Myb domain
Pfam	PF00249	6.1E-14	111	154	IPR001005	SANT/Myb domain
CDD	cd00167	3.87E-11	113	153	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.0E-21	113	160	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0032875	Biological Process	regulation of DNA endoreduplication
GO:0003677	Molecular Function	DNA binding
GO:0003713	Molecular Function	transcription coactivator activity

Sequence ? help Back to Top
Protein Sequence Length: 944 aa Download sequence Send to blast
MESLLDLRRL LKKEKSAMNQ KGDDLSMGGP PVRHGVPPKE IGPLKRMPYC PQLFRHTTGR 60 TGKKLEDEII VQMVNKLGPK KWSTIAQALP GRIGKQCRER WYNHLNPGIN KEAWTQEEEI 120 TLIHAHRMYG NKWAELTKFL PGRTDNSIKN HWNSSVKKKV NSYMSSGLLT QVSCLPLNEY 180 SANCNSSPAM TQQNSEDSGC FAVREVENSS GCSQSSLAKV SCSQVHDTTV PLGCDLQVNA 240 NFDKNEAHDS QSSMGPQACY TSAEAVASAL PAVHCHVSSS NLDPDQHLQE DFAQGLNLDM 300 TIDEMPTVPS VADNQTVCSI ENHERSLEPY DVAMEVPLSM LSSDSGAEQK LHFMSEADFN 360 SPNCLKSELW QDISLQGLLS GPDAVEADSF SRSNHQLDVY SSEADTHFLA PPYMPQTSNS 420 SSVMGLADDQ SPQMSVPPSL ICSNAMTDDA PFDNRPGRKE MPLSQAEVVT QSSSSSGDAE 480 MFANPGCSND RHVPSSTMES IPECGDQQVT NAEEPEASLE KEPSLTQSVT APDEQDKGAL 540 YYEPPRFPSL DVPFVSCDLV TSGDLQEFSP LGIRQLMHST MNVCTPMRLW GSPTHDESTG 600 VLLKSAAKSF ICTPSILKKR HRDLLSPIPD KRIEKKYGTE KDRGVSDTSS TGIQTSCINA 660 TKDDALITTV LRIERSASSK SLEKKLVFSD ENKENLGYTT EQTKDGKSAG NDEHMDEQTT 720 GERSSATNVA TNADLSGNLQ PAGILIEHSG DDPISSDYGK NTMNQKLNTN VKSLSVCKEG 780 VCAKSKPTEL IVEKSSPCIN VDYEYVNILA DTPGIKRGLE SPSAWKSPWF VDMHFQGSYF 840 TSPADSYDAL GLMKQINVQT AAALVEAREV LASGGQCDNI SSDKENTGNP DAKKEPGTTK 900 LQTKIMSPGF RVYHTCKIIR QKCWQQSGKI SELTYSFVPS SEKF

Sequence ? help Back to Top

Protein Sequence Length: 944 aa Download sequence Send to blast

MESLLDLRRL LKKEKSAMNQ KGDDLSMGGP PVRHGVPPKE IGPLKRMPYC PQLFRHTTGR  60
TGKKLEDEII VQMVNKLGPK KWSTIAQALP GRIGKQCRER WYNHLNPGIN KEAWTQEEEI  120
TLIHAHRMYG NKWAELTKFL PGRTDNSIKN HWNSSVKKKV NSYMSSGLLT QVSCLPLNEY  180
SANCNSSPAM TQQNSEDSGC FAVREVENSS GCSQSSLAKV SCSQVHDTTV PLGCDLQVNA  240
NFDKNEAHDS QSSMGPQACY TSAEAVASAL PAVHCHVSSS NLDPDQHLQE DFAQGLNLDM  300
TIDEMPTVPS VADNQTVCSI ENHERSLEPY DVAMEVPLSM LSSDSGAEQK LHFMSEADFN  360
SPNCLKSELW QDISLQGLLS GPDAVEADSF SRSNHQLDVY SSEADTHFLA PPYMPQTSNS  420
SSVMGLADDQ SPQMSVPPSL ICSNAMTDDA PFDNRPGRKE MPLSQAEVVT QSSSSSGDAE  480
MFANPGCSND RHVPSSTMES IPECGDQQVT NAEEPEASLE KEPSLTQSVT APDEQDKGAL  540
YYEPPRFPSL DVPFVSCDLV TSGDLQEFSP LGIRQLMHST MNVCTPMRLW GSPTHDESTG  600
VLLKSAAKSF ICTPSILKKR HRDLLSPIPD KRIEKKYGTE KDRGVSDTSS TGIQTSCINA  660
TKDDALITTV LRIERSASSK SLEKKLVFSD ENKENLGYTT EQTKDGKSAG NDEHMDEQTT  720
GERSSATNVA TNADLSGNLQ PAGILIEHSG DDPISSDYGK NTMNQKLNTN VKSLSVCKEG  780
VCAKSKPTEL IVEKSSPCIN VDYEYVNILA DTPGIKRGLE SPSAWKSPWF VDMHFQGSYF  840
TSPADSYDAL GLMKQINVQT AAALVEAREV LASGGQCDNI SSDKENTGNP DAKKEPGTTK  900
LQTKIMSPGF RVYHTCKIIR QKCWQQSGKI SELTYSFVPS SEKF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1mse_C	5e-40	64	160	9	105	C-Myb DNA-Binding Domain
1msf_C	5e-40	64	160	9	105	C-Myb DNA-Binding Domain
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00505	DAP	Transfer from AT5G11510	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK318601	0.0	AK318601.1 Oryza sativa Japonica Group cDNA, clone: J100066E24, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015625869.1	0.0	transcription factor MYB3R-1
TrEMBL	A0A0D3ELC6	0.0	A0A0D3ELC6_9ORYZ; Uncharacterized protein
STRING	ORGLA01G0073200.1	0.0	(Oryza glaberrima)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11510.1	1e-86	myb domain protein 3r-4