PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART01G09250.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 310aa MW: 32834.9 Da PI: 8.4577

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART01G09250.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	72.2	6.7e-23	44	90	4	50
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50 ++s e++sk Fslpi++AA+ Lgvc++vLKriCR +GI RWP+Rk+ OBART01G09250.1 44 SLSYEEISKLFSLPIAEAASILGVCTSVLKRICRSHGIVRWPYRKLV 90 6899*****************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.097	27	112	IPR003035	RWP-RK domain
Pfam	PF02042	5.1E-21	45	90	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MASTAQPQQQ PQQQQEQQPV AAAAVPTPAP PASEAQPQKP TRVSLSYEEI SKLFSLPIAE 60 AASILGVCTS VLKRICRSHG IVRWPYRKLV SGKSGDDTKN AEREKAKGLL EISKVAKQKA 120 LSASGLSTVS PGAFQGVAKS QQGSSKAGQV SPPGKQNVLG GSAILSYGTQ TKGIPTYMDD 180 FKYGFPSSGL SLQTMKWWGT DSHTETTPAK DDNGEAPESA NEASKGMTDD ELDWGADEAE 240 AEADADSAIT TEPSAQLCSL RRKAVDDGRK LLTGKSCGGL ELCRLNKRQK MALAQVFGAS 300 LPEQLRSKLG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK058984	0.0	AK058984.1 Oryza sativa Japonica Group cDNA clone:001-020-E04, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015625714.1	0.0	uncharacterized protein LOC4326758
TrEMBL	A0A0D3ELQ3	0.0	A0A0D3ELQ3_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0MTU8	0.0	A0A0E0MTU8_ORYRU; Uncharacterized protein
TrEMBL	Q9ARR2	0.0	Q9ARR2_ORYSJ; Uncharacterized protein OSJNBa0004G10.21
STRING	OBART01G09250.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6705	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74480.1	3e-10	RWP-RK domain-containing protein