PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G09260.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 550aa    MW: 56597.9 Da    PI: 7.269
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G09260.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.21.1e-30311369259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+
  OBART01G09260.1 311 ADGCQWRKYGQKMAKGNPCPRAYYRCTMAtGCPVRKQVQRCAEDRSILITTYEGTHNHP 369
                      7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.7E-34295371IPR003657WRKY domain
SuperFamilySSF1182905.1E-28303371IPR003657WRKY domain
PROSITE profilePS5081129.505305371IPR003657WRKY domain
SMARTSM007744.1E-37310370IPR003657WRKY domain
PfamPF031063.4E-27312369IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0016036Biological Processcellular response to phosphate starvation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080169Biological Processcellular response to boron-containing substance deprivation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MDKGHLGGGG GGGGGLLALD ASPRPLGFLN LLSPPPFHRS TMEADDSGGG GGRARRSVEV  60
DFFSDEKKNM KKSRVSGGAA AEADDAKGPA AAGLAIKKED LTINLLPAGN NARSDRSMVV  120
DDDAASRPDH EEKSRSSNEL AAMQAELGRM NEENQRLRGM LTQVTTSYQA LQMHLVALMQ  180
QRPQMMQPPT QPEPPPPHQD GKAEGAVVPR QFLDLGPSSG AGGEAAEEPS NSSTEAGSPR  240
RSSSTGNKDQ ERGDSPDAPS TAAAWLPGRA MAPQMGAAGA AGKSHDQQAQ DANMRKARVS  300
VRARSEAPII ADGCQWRKYG QKMAKGNPCP RAYYRCTMAT GCPVRKQVQR CAEDRSILIT  360
TYEGTHNHPL PPAAMAMAST TSAAASMLLS GSMPSADGAA GLMSSNFLAR TFQVPLPGGG  420
MAPAFAVPPQ VLYNQSKFSG LQMSSDSAEA AAAAAAAAAA AAAQFAQPRP PIGQLPGPLS  480
DTVSAAAAAI TADPNFTVAL AAAITSIIGG QHAAAAGNSN ANNTNTNTTS NTNNTSSNNT  540
TSNNTNSETQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-23297373176WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00209DAPTransfer from AT1G62300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6769280.0AY676928.1 Oryza sativa (indica cultivar-group) transcription factor OsWRKY99 (OsWRKY99) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622142.10.0probable WRKY transcription factor 31 isoform X2
TrEMBLA0A0D3ELQ40.0A0A0D3ELQ4_9ORYZ; Uncharacterized protein
STRINGOBART01G09260.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52653656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.14e-71WRKY family protein