PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G09550.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 167aa    MW: 17922 Da    PI: 8.7289
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G09550.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.93.9e-096990627
                     -SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  6 CrffartGtCkyGdrCkFaHgp 27
                     C++f rtGtCk+Gd+C++ H++
  OBART01G09550.1 69 CQHFVRTGTCKFGDSCRYFHPK 90
                     ********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004519.2E-4338IPR003604Zinc finger, U1-type
SuperFamilySSF576673.42E-14447No hitNo description
PfamPF062201.1E-9537IPR013085Zinc finger, U1-C type
SMARTSM003561.1E-46590IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-76790IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-66888IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-76890IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.8316891IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MPLGKYYCDY CEKQFQDTPA ARKRHLDGAQ HHRARALWYD AVRRQELHGG GGGAPPLFHQ  60
PGAAAIGVCQ HFVRTGTCKF GDSCRYFHPK PPPANPGPAP SGPVSGPMAQ QSNIQGSQPN  120
FVGYQAADGS SFSGNILGGH TSWGNLPPSL RPPPEGGYPP FPFVDWG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0714200.0AK071420.1 Oryza sativa Japonica Group cDNA clone:J023090K17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610914.11e-119zinc finger CCCH domain-containing protein 3
SwissprotQ0JP111e-120C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBLA0A0D3ELU11e-118A0A0D3ELU1_9ORYZ; Uncharacterized protein
TrEMBLI1NLX51e-118I1NLX5_ORYGL; Uncharacterized protein
STRINGORGLA01G0086500.11e-119(Oryza glaberrima)
STRINGOBART01G09550.11e-119(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP126172326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.14e-27C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]