PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G11630.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 259aa    MW: 28791.5 Da    PI: 7.0207
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G11630.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.92e-091932262255
                      SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
         Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                       +yp++e++ +LA+++gL+ +q+ +WF N+R ++
  OBART01G11630.1 193 WPYPTEEDKLRLAARTGLDPKQINNWFINQRKRH 226
                      69*****************************885 PP
2ELK33.49.7e-12146167122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELK++Ll+KYsg+L+ L++EF+
  OBART01G11630.1 146 ELKEMLLKKYSGCLSRLRSEFL 167
                      9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.4E-19143IPR005540KNOX1
PfamPF037901.1E-20141IPR005540KNOX1
SMARTSM012562.5E-2849100IPR005541KNOX2
PfamPF037911.2E-245299IPR005541KNOX2
PfamPF037891.1E-8146167IPR005539ELK domain
PROSITE profilePS5121310.423146166IPR005539ELK domain
SMARTSM011883.6E-6146167IPR005539ELK domain
PROSITE profilePS5007112.843166229IPR001356Homeobox domain
SuperFamilySSF466893.25E-19168231IPR009057Homeodomain-like
SMARTSM003891.1E-13168233IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.0E-27171229IPR009057Homeodomain-like
CDDcd000861.94E-13178230No hitNo description
PfamPF059205.1E-17186225IPR008422Homeobox KN domain
PROSITE patternPS000270204227IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MKAQIAGHPR YPTLLSAYIE CRKVGAPPEV ASLLEEIGRE RRAGGGGGGA GQIGVDPELD  60
EFMEAYCRVL VRYKEELSRP FDEAASFLSS IQTQLSNLCS GATSPPATTA THSDEMVGSS  120
DEDQCSGETD MLDIGQEQSS RLADHELKEM LLKKYSGCLS RLRSEFLKKR KKGKLPKDAR  180
SALLEWWNTH YRWPYPTEED KLRLAARTGL DPKQINNWFI NQRKRHWKPS DGMRFALMEG  240
VAGGSSGTTL YFDTGTIGP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161170LRSEFLKKRK
2167171KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00670PBMTransfer from GRMZM2G087741Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0288830.0AB028883.1 Oryza sativa mRNA for knotted1-type homeobox protein OSH6, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634297.10.0homeobox protein knotted-1-like 1
SwissprotQ9FP290.0KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLA0A0D9Y7A20.0A0A0D9Y7A2_9ORYZ; Uncharacterized protein
TrEMBLI1NM880.0I1NM88_ORYGL; Uncharacterized protein
STRINGOGLUM01G14210.10.0(Oryza glumipatula)
STRINGORGLA01G0097800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16983892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.11e-78KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]