PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G11950.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 585aa    MW: 61619.6 Da    PI: 6.3978
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G11950.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.67.3e-16388434455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k Lq
  OBART01G11950.1 388 VHNLSERRRRDRINEKMRALQELIPNC-----NKIDKASMLDEAIEYLKTLQ 434
                      5*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.36E-17381438No hitNo description
SuperFamilySSF474591.7E-20382443IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.981384433IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-13388434IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-20388442IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-17390439IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MSDGNDFAEL LWENGQAVVH GRKKHPQPAF PPFGFFGGTG GGGGGSSSRA QERQPGGIDA  60
FAKVGGGFGA LGMAPAVHDF ASGFGATTQD NGDDDTVPWI HYPIIDDEDA AAPAALAAAD  120
YGSDFFSELQ AAAAAAAAAA PPTDLASLPA SNHNGATNNR NAPVATTTTR EPSKESHGGL  180
SVPTTRAEPQ PQPQLAAAKL PRSSGSGGGE GVMNFSLFSR PAVLARATLE SAQRTQGTDN  240
KASNVTASNR VESTVVQTAS GPRSAPTFAD QRAAAWPPQP KEMPFASTAA APMAPAVNLH  300
HEMGRDRAGR TMPVHKTEAR KAPEATGATS SVCSGNGAGS DELWRQQKRK CQAQAECSAS  360
QDDDLDDEPG VLRKSGTRST KRSRTAEVHN LSERRRRDRI NEKMRALQEL IPNCNKIDKA  420
SMLDEAIEYL KTLQLQVQMM SMGTGLCIPP MLLPTAMQHL QIPPMAHFPH LGMGLGYGMG  480
VFDMSNTGAL QMPPMPGAHF PCPMIPGAMA NMVQDQQQGI ANQQQQCLNK EAIQGANPGD  540
SQMQIIMQGD NENFRIPSSA QTKSSQFSDG TGKGTNARER DGAET
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1392397ERRRRD
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act as negative regulator of phyB-dependent light signal transduction. {ECO:0000269|PubMed:17485859}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by light in dark-grown etiolated seedlings. {ECO:0000269|PubMed:17485859}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1022520.0AK102252.1 Oryza sativa Japonica Group cDNA clone:J033088H11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619034.10.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15-like isoform X2
SwissprotQ0JNI90.0PIL15_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15
TrEMBLA0A0D3EMM90.0A0A0D3EMM9_9ORYZ; Uncharacterized protein
STRINGOBART01G11950.30.0(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-34phytochrome interacting factor 3
Publications ? help Back to Top
  1. Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T
    Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa.
    Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91
    [PMID:17485859]
  2. Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
    An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
    N Biotechnol, 2011. 28(6): p. 788-97
    [PMID:21549224]