PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G12100.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 470aa    MW: 49228.7 Da    PI: 7.5907
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G12100.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY971.3e-30202260259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++v+++tYeg+Hnh+
  OBART01G12100.1 202 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAiGCPVRKQVQRCAEDKTVLITTYEGNHNHQ 260
                      7*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.3E-33186262IPR003657WRKY domain
SuperFamilySSF1182901.44E-27194262IPR003657WRKY domain
PROSITE profilePS5081129.31196262IPR003657WRKY domain
SMARTSM007746.8E-36201261IPR003657WRKY domain
PfamPF031063.8E-26203260IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MELRPPPPKH HHHRRRGGDG EDGEEEEEEV EARHGGGWDF GWKEATTAAV DVELRRVVEE  60
NRRLRGMLDE LTRSYSALYH QYLQVTQQQN HRHPDHHLIM NNNNNRPSLA QTHRTAATTT  120
ATTQQFLEPR ASSTAQAAAD ADMAASDDEA GNKMRRVGGQ DETAAAAPAR ENGEQQAAAA  180
AELPCRKPRV SVRARSEAPM ISDGCQWRKY GQKMAKGNPC PRAYYRCTMA IGCPVRKQVQ  240
RCAEDKTVLI TTYEGNHNHQ LPPAATTMAN TTSAAAAMLL SGPAASRDGA AAALLGHHHH  300
HHPAAMFHQS FPYASTMATL SASAPFPTIT LDLTQTPAGG AGAASLLHAL HRPPVIHPGA  360
AAQAMPFAVP PQLAMQPSVM ETVTAALAAD PNFTTALAAA ISSVVAGGAH HQALSTTPRG  420
SAAGAGDGNG NGSSAAAVAT GAASPAATAG APAASGSPPR LATQSCTTSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-21189264276WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2432750.0AK243275.1 Oryza sativa Japonica Group cDNA, clone: J100050A06, full insert sequence.
GenBankAP0024800.0AP002480.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, clone:P0469E05.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880603.10.0probable WRKY transcription factor 47 isoform X1
TrEMBLA0A0D3EMQ30.0A0A0D3EMQ3_9ORYZ; Uncharacterized protein
STRINGOBART01G12100.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43583260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01720.12e-55WRKY family protein