PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G14240.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 407aa    MW: 42668.1 Da    PI: 4.3805
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G14240.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.24.2e-131350542
                     SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
           SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                        +r  t++kR++ + KKAeE S+LC+++va++ +++
  OBART01G14240.1 13 HRQKRAATYAKRKESLRKKAEEFSTLCGVRVALVCAGP 50
                     567899****************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.4E-7169IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.474146IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-15179IPR002100Transcription factor, MADS-box
CDDcd002668.78E-18247No hitNo description
PfamPF003193.3E-131150IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MARRKIPIGL IAHRQKRAAT YAKRKESLRK KAEEFSTLCG VRVALVCAGP VVPGGGGGAA  60
GKEEVWESEE GVLAEYRALP SEARAQHAHR VYLEEEVGKE RAKLARVRQD GAFPSWDAAL  120
DGITADEARA LLESIDAARA AANARREALG LPDDGNGVDD DGGLDLQQQQ EHVPPGGSDA  180
VVVPVGHGVL QYTGSGGGNQ MQTTPAADGI NCADLYGAVP WDDTFQLQVM RTGDHFVPMD  240
GYLWQAPGNG WPDLATGCTN ESCSCNAAAA AAAMPAMYPP NLDTVHGSFL AAPAQPIPIA  300
FSTGTDFIDA PNDFLTMGLC GGFTNVGDYS AAQPQSSADG GFQLGDTFAA EPGDTQSQNW  360
GSFINVVSDD SAQCNCNAAI HLDQMNYLFG GTGGGEPSDT QSRHWGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033310.0AP003331.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1088D01.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D3END90.0A0A0D3END9_9ORYZ; Uncharacterized protein
STRINGOBART01G14240.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150691120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58890.13e-12AGAMOUS-like 82