PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G14380.2
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 98aa    MW: 10658.1 Da    PI: 10.3632
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G14380.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA43.54.3e-141251135
             GATA 11 lWRrgpdgnktLCnaCGlyyrkkgl 35
                     +WR+gp g+++LCnaCG++yrkk++
  OBART01G14380.2  1 MWRSGPTGPRSLCNACGIRYRKKRR 25
                     7*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.2E-4135IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.09E-6125No hitNo description
PfamPF003205.4E-12125IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.5E-9126IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.62E-9226No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MWRSGPTGPR SLCNACGIRY RKKRRQDLGL DLNQPQKQEH GEVIPEVKDS NSNSNSGSGN  60
SSSNLQVVPK RRLLMGVEEA ALLLMTLSSP SASTLLHG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1324001e-141BT132400.1 Oryza sativa clone RRlibD00393 mRNA sequence.
GenBankCT8296261e-141CT829626.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA214F08, full insert sequence.
GenBankCT8415701e-141CT841570.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C102C07, full insert sequence.
GenBankCU4066001e-141CU406600.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C103I12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621366.17e-52GATA transcription factor 23
TrEMBLA0A0D3ENF38e-65A0A0D3ENF3_9ORYZ; Uncharacterized protein
TrEMBLI1NMU78e-65I1NMU7_ORYGL; Uncharacterized protein
STRINGORGLA01G0118700.11e-65(Oryza glaberrima)
STRINGOBART01G14380.11e-65(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26930.11e-12GATA transcription factor 23