PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G18790.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 182aa    MW: 18967.8 Da    PI: 10.0686
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G18790.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.83.5e-1142100563
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      ++ +rk++NR++A+rsR+RK+++++eL+  v++L a N aL   + e    +a++++e+
  OBART01G18790.1  42 RKRKRKESNRLSAQRSRARKQQQLDELAGQVAALRARNGALGLAAREAARRCAAVRAEN 100
                      6789*************************************999999999998888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.7E-1238102IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.1854082IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.4E-94082No hitNo description
SuperFamilySSF579593.7E-84282No hitNo description
PfamPF001702.3E-84299IPR004827Basic-leucine zipper domain
CDDcd147027.68E-164382No hitNo description
PROSITE patternPS0003604560IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MASPGVVCTT VTPTSSAGSD QVVAGGGEAA RRPVAPAVME ERKRKRKESN RLSAQRSRAR  60
KQQQLDELAG QVAALRARNG ALGLAAREAA RRCAAVRAEN ELLRARSVEL AARLDSLTDL  120
AQCLHDAAAA SSFAAAPPMM MAGAATAFPT GAVGAAAGFM MPQLPPPLLD ATTMGMHCNY  180
YY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14146RKRKRK
24147RKRKRKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1105260.0AK110526.1 Oryza sativa Japonica Group cDNA clone:002-167-H10, full insert sequence.
GenBankAP0042330.0AP004233.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0065J17.
GenBankAP0043610.0AP004361.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0062A24.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641337.11e-127ocs element-binding factor 1
TrEMBLA0A0D3EPW71e-125A0A0D3EPW7_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9YA691e-125A0A0D9YA69_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0FMU51e-125A0A0E0FMU5_ORYNI; Uncharacterized protein
TrEMBLQ8RYP61e-125Q8RYP6_ORYSJ; Os01g0542700 protein
STRINGOGLUM01G22270.11e-126(Oryza glumipatula)
STRINGOS01T0542700-011e-126(Oryza sativa)
STRINGONIVA01G21240.11e-126(Oryza nivara)
STRINGOBART01G18790.11e-126(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137572428