PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART01G19230.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 441aa MW: 47810.2 Da PI: 6.4628

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART01G19230.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	85.3	5.3e-27	284	333	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i +edl++yF++pi++AA+e++v+lTvLK++CR++G++RWPhRk+ksl OBART01G19230.1 284 DHIGFEDLRRYFYMPITKAAREMNVGLTVLKKRCRELGVARWPHRKMKSL 333 6899********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.496	273	353	IPR003035	RWP-RK domain
Pfam	PF02042	3.7E-21	286	333	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence Send to blast
MEMHECCYYG GSIGGDWLNP LAAIPPPCSS SSSSWSSQLL LLSDHDDVLL HSAGDHGGAV 60 AGIGGACMTA DLVVRDEEME MAAGYLPVAA SAAAAADVDH YMYQQFQLEP DQFVSTLPAV 120 AVAVAATAGG GSHDDELLRM PFTDIDLDAF ADARDVVVGV GEPKPSPQHT LDAAIALPAV 180 GGGGAHHFGT QDDDVKFDVT KQRNDAALAG DDSLSMVIVE SYEMGMRRHA AEQEQEQKPK 240 IITSAATTLT PLPLPPPPPP PPRVTRSRRD GSSAATAGGK TRLDHIGFED LRRYFYMPIT 300 KAAREMNVGL TVLKKRCREL GVARWPHRKM KSLKSLILNE MGSKGMSAAA MRRELEALEN 360 CCALMERNPA VELTERTKKL RQACFKENYK RRRAAAVDVL DLDHCFSFAA GHCHRHHHQQ 420 LALPPPPAAA ADHRRRDFFG Y

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence Send to blast

MEMHECCYYG GSIGGDWLNP LAAIPPPCSS SSSSWSSQLL LLSDHDDVLL HSAGDHGGAV  60
AGIGGACMTA DLVVRDEEME MAAGYLPVAA SAAAAADVDH YMYQQFQLEP DQFVSTLPAV  120
AVAVAATAGG GSHDDELLRM PFTDIDLDAF ADARDVVVGV GEPKPSPQHT LDAAIALPAV  180
GGGGAHHFGT QDDDVKFDVT KQRNDAALAG DDSLSMVIVE SYEMGMRRHA AEQEQEQKPK  240
IITSAATTLT PLPLPPPPPP PPRVTRSRRD GSSAATAGGK TRLDHIGFED LRRYFYMPIT  300
KAAREMNVGL TVLKKRCREL GVARWPHRKM KSLKSLILNE MGSKGMSAAA MRRELEALEN  360
CCALMERNPA VELTERTKKL RQACFKENYK RRRAAAVDVL DLDHCFSFAA GHCHRHHHQQ  420
LALPPPPAAA ADHRRRDFFG Y

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003933	0.0	AP003933.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0066C06.
GenBank	AP004258	0.0	AP004258.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0024F24.
GenBank	AP014957	0.0	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBank	CP012609	0.0	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015638205.1	0.0	uncharacterized protein LOC107276829
TrEMBL	A0A0D3EQ18	0.0	A0A0D3EQ18_9ORYZ; Uncharacterized protein
TrEMBL	Q8RYX0	0.0	Q8RYX0_ORYSJ; Pentatricopeptide (PPR) repeat-containing protein-like
STRING	OBART01G19230.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12888	23	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	4e-31	RWP-RK domain-containing protein