PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G20060.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 379aa    MW: 41665.4 Da    PI: 6.3797
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G20060.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind101.67e-32711652103
                      HHHHHHHHHCTGGGTTTSEES..SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
     HSF_DNA-bind   2 Flkklyeiledeelkelisws..engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                      F+ k+ye++ d+ ++ ++sw    +g sfvv+d++ +a  vLp++Fkh nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+l
  OBART01G20060.1  71 FVAKTYEMVADAGTDAVVSWGpgGSGASFVVWDPHALAAGVLPRFFKHANFSSFVRQLNTYGFRKVTPDR---------WEFANEAFLAGQKHL 155
                      9********************655679*****************************************99.........*************** PP

                      XXXXXXXXXX CS
     HSF_DNA-bind  94 lekikrkkse 103
                      l++ikr++ +
  OBART01G20060.1 156 LKNIKRRRVS 165
                      ******9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.9E-3067162IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.7E-3467162IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.6E-5367162IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.8E-2871162IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-177194IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-17111123IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340112136IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-17124136IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MASSSSSLCR LLIPRPTTRR FSRGGEGGMA AAPVKREVKP EAGEGWGGGD LGVVPPPRPM  60
EGLGEAGPAP FVAKTYEMVA DAGTDAVVSW GPGGSGASFV VWDPHALAAG VLPRFFKHAN  120
FSSFVRQLNT YGFRKVTPDR WEFANEAFLA GQKHLLKNIK RRRVSKPLMD SQLRNKTSVV  180
FGQPEAPGEV VSLKRDRAAL RAEVIMLKQQ YNACKSQLIA MEEMVRNIER RQQQTISFFA  240
KVLTNPVFVQ QVLLNYVNKN GLRGTAKRQR LMENEEQHAD SPLNKGMEAA SVMEADVSPG  300
STGCGTVGKV ETTPMCNFQN IENLCDDVWE ELDALPETGM EQEDKAGIGS FDVEEFVGRP  360
CGWVDDCPYL VEPMQFVEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-234716210129Heat shock factor protein 1
5d5v_B5e-234716210129Heat shock factor protein 1
5d5v_D5e-234716210129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155161LKNIKRR
2159163KRRRV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0642710.0AK064271.1 Oryza sativa Japonica Group cDNA clone:002-105-E08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631502.10.0heat stress transcription factor A-6a
SwissprotQ657C00.0HFA6B_ORYSJ; Heat stress transcription factor A-6a
TrEMBLI1NP720.0I1NP72_ORYGL; Uncharacterized protein
STRINGORGLA01G0166200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.17e-75heat shock transcription factor A2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]