PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G20150.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 378aa    MW: 42097 Da    PI: 7.9817
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G20150.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.23.3e-0694116123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cgk F r  nL+ H r H
  OBART01G20150.1  94 FVCEICGKGFQRDQNLQLHRRGH 116
                      89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.29E-793116No hitNo description
SMARTSM003550.01294116IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.0E-594116IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.61494116IPR007087Zinc finger, C2H2
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
SMARTSM00355130136166IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.29E-7166191No hitNo description
SMARTSM00355160171191IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MFHHHLQQQQ QQEEEEGGGL FLVEEAAEAA DQQQESSMSN LTSSASTAPP PPPPSSGNNG  60
NNSNKRKRSL PGNPDPEAEV VALSPATLMA TNRFVCEICG KGFQRDQNLQ LHRRGHNLPW  120
KLKQRGSKEA VRKKVYICPE ASCVHHDPSR ALGDLTGIKK HFFRKHGEKK WKCDKCSKKY  180
AVHSDWKAHS KICGTREYKC DCGTIFSRRD SFITHRAFCD ALTEESAKAI GGIPAAAMAA  240
PGHHHHHHHQ LLFSPPPVMA HHQELAALQE QQQQQHHQDV MQSPHQHQQQ QLVQQNCGYA  300
VKPEMAPDFL GLRAFSHRDI LLAGFDSSCM GHVNAAAGMA GYEPPPPHHG QPQHQHQQQQ  360
QQQQGGSNEP WHGMGSHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-34167228364Zinc finger protein JACKDAW
5b3h_F7e-34167228364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120133KLKQRGSKEAVRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2892090.0AK289209.1 Oryza sativa Japonica Group cDNA, clone: J100058I16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622202.11e-163protein indeterminate-domain 7
SwissprotQ8H1F51e-108IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A0D3EQD20.0A0A0D3EQD2_9ORYZ; Uncharacterized protein
STRINGOBART01G20150.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.16e-91indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]