PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G20170.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 167aa    MW: 17682.7 Da    PI: 4.3298
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G20170.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26044.16.1e-142534798
           DUF260 47 kalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98
                     ++++ee r+dam+s+vye++a++ dPv Ga+g+++ l+q+l++lkael+++k
  OBART01G20170.1  2 ASASEELRDDAMKSVVYESDAWVIDPVGGAAGIVKGLSQELARLKAELDAVK 53
                     5678999*****************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508919.693156IPR004883Lateral organ boundaries, LOB
PfamPF031954.7E-10353IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MASASEELRD DAMKSVVYES DAWVIDPVGG AAGIVKGLSQ ELARLKAELD AVKGLIELHR  60
RAAAQQQQQP PVAVASNGGF LPSPPPPPQG QQQLLFLPPP LPTMMLQDGH CDDETVEDDY  120
LVGPPAVDAA AATSTAPERR GDGHAPPANV KEEGNVDHTS SMSFRDR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033080.0AP003308.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1129G05.
GenBankAP0034130.0AP003413.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1151A10.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638299.13e-55LOB domain-containing protein 11
TrEMBLA0A0D3EQD41e-117A0A0D3EQD4_9ORYZ; Uncharacterized protein
STRINGOBART01G20170.11e-118(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP158291113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.41e-06LBD family protein