PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G20230.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 66aa    MW: 6953.94 Da    PI: 5.451
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G20230.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260575.8e-181162151
           DUF260  1 aCaaCkvlrr.kCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpe 51
                     +CaaC++++r +C+++C+lapyfpa++p++f++++ lFG++ +l  l+a+ +
  OBART01G20230.1 11 PCAACAHQGRpSCPAGCPLAPYFPADRPERFEYANLLFGVDGILCRLEAAGP 62
                     7*********9********************************999988755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089111.5351066IPR004883Lateral organ boundaries, LOB
PfamPF031958.8E-141160IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 66 aa     Download sequence    Send to blast
MADPPPPHHP PCAACAHQGR PSCPAGCPLA PYFPADRPER FEYANLLFGV DGILCRLEAA  60
GPDTGL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0034131e-101AP003413.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1151A10.
GenBankAP0149571e-101AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878934.12e-39LOB domain-containing protein 22-like
TrEMBLA0A0D3EQE04e-39A0A0D3EQE0_9ORYZ; Uncharacterized protein
TrEMBLI1NP845e-39I1NP84_ORYGL; Uncharacterized protein
STRINGORGLA01G0167400.18e-40(Oryza glaberrima)
STRINGOBART01G20230.17e-40(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP153751118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.18e-10LOB domain-containing protein 27