PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G20310.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 319aa    MW: 33944.6 Da    PI: 4.7402
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G20310.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.4e-13132177555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h + Er+RR+++N++f++Lr+llP++      K +K ++L  A +Y+ksL+
  OBART01G20310.1 132 HMMSERKRREKLNDSFHTLRSLLPPC-----SKKDKTTVLINAAKYLKSLE 177
                      7789*********************9.....699***************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.939127176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.51E-16130193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.49E-13132180No hitNo description
PfamPF000101.1E-10132177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-16132194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-12133182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MDEVWCSLDS MPADIAAGIH QPPPPDLHDP SFWPAFADCA ASFIAGGGGD NACFDELMAG  60
GSSGDTRMVA MDDGADGSGF LVGDAEAEHL MLSSSSPSSL SSGRSLSIDS AGSMSSFSLD  120
AAAALAISQL YHMMSERKRR EKLNDSFHTL RSLLPPCSKK DKTTVLINAA KYLKSLETEI  180
TELEGTNTKL EKHIAGGGGA ADAAMRARRA QQRAKVQISK AADSQSQQLV NLTVMVMVEC  240
DVVELVLHIL ECLRWMKEIS VLSVYADTYS PQLLLKAIAN IKLQIMGGDW NEASFHEAMT  300
KAANDATISC APLAITAAQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135140ERKRRE
2136141RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1063330.0AK106333.1 Oryza sativa Japonica Group cDNA clone:002-101-F10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630527.11e-114putative transcription factor bHLH041
TrEMBLA0A0D3EQE80.0A0A0D3EQE8_9ORYZ; Uncharacterized protein
STRINGOBART01G20310.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101743136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.12e-21bHLH family protein