PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G20350.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 332aa    MW: 35519.4 Da    PI: 6.6778
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G20350.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH421.7e-13167214355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      ++h + ErrRR+++N+ f  L++l+P+ +      K++Ka+iL +++ Y+k+L+
  OBART01G20350.1 167 KNHVMSERRRREKLNEMFLILKSLVPSiN------KVDKASILAETIAYLKELE 214
                      5899***********************77......****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.904164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.51E-15167218No hitNo description
SuperFamilySSF474592.49E-18167229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-17168224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-11168214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-15170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MVAGSAGRTA AWCVRATVSE EPNVVNRITT AFWDLQLPAC SDEPISSGTP SSPSSPPKET  60
GDANTVVIDD LFLVHSDAIP AGGDLQEEDH QLGTGITTAA GSWIELLDHV VDSPASCFVP  120
WKRTDPDKEA VAGGGGGGGE AAQRLLKKAV GGGGGAWMNR AAGGSIKNHV MSERRRREKL  180
NEMFLILKSL VPSINKVDKA SILAETIAYL KELERRVQEL ESGKKVSRPA KRKPCSETIT  240
GSGGGGDAGA VKEHHHWVLS ESQEGTPSDV RVIVMDKDEL HLEVHCRWKE LMMTRVFDAI  300
KSLRLDVLSV HASAPDGLLG LKIRAKVVSL TQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-13168224864Transcription factor MYC2
5gnj_B5e-13168224864Transcription factor MYC2
5gnj_E5e-13168224864Transcription factor MYC2
5gnj_F5e-13168224864Transcription factor MYC2
5gnj_G5e-13168224864Transcription factor MYC2
5gnj_I5e-13168224864Transcription factor MYC2
5gnj_M5e-13168224864Transcription factor MYC2
5gnj_N5e-13168224864Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172177ERRRRE
2173178RRRREK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0029080.0AP002908.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0013G02.
GenBankAP0033100.0AP003310.5 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0022F12.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638330.11e-166anthocyanin regulatory R-S protein
SwissprotP135263e-56ARLC_MAIZE; Anthocyanin regulatory Lc protein
TrEMBLA0A0D3EQF20.0A0A0D3EQF2_9ORYZ; Uncharacterized protein
STRINGOBART01G20350.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.14e-26bHLH family protein
Publications ? help Back to Top
  1. Pattanaik S,Xie CH,Yuan L
    The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength.
    Planta, 2008. 227(3): p. 707-15
    [PMID:18075757]
  2. Huang ZA, et al.
    The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.).
    J Genet Genomics, 2012. 39(3): p. 149-56
    [PMID:22464474]
  3. Ludwig SR,Habera LF,Dellaporta SL,Wessler SR
    Lc, a member of the maize R gene family responsible for tissue-specific anthocyanin production, encodes a protein similar to transcriptional activators and contains the myc-homology region.
    Proc. Natl. Acad. Sci. U.S.A., 1989. 86(18): p. 7092-6
    [PMID:2674946]
  4. Li P, et al.
    Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize.
    PLoS ONE, 2018. 13(1): p. e0190670
    [PMID:29304111]