PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G20830.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 227aa    MW: 24558.4 Da    PI: 8.5978
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G20830.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.83.5e-31136194159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYG+K+vk+s++pr+YYrC+s+gC+vkk+ver+++d ++v++tY g Hnh+
  OBART01G20830.1 136 LDDGYRWRKYGKKMVKNSPNPRNYYRCSSEGCRVKKRVERARDDARFVVTTYDGVHNHP 194
                      59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-33123196IPR003657WRKY domain
SuperFamilySSF1182903.01E-28129196IPR003657WRKY domain
PROSITE profilePS5081133.35131196IPR003657WRKY domain
SMARTSM007741.1E-36136195IPR003657WRKY domain
PfamPF031062.0E-24137194IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MSSLYPSLLS LSESPAEYRQ VGGGRYAGED VVVDDDDMAA VADAVSSYLS FDMDDVEYYT  60
PEVGFHSKQH NPPPVAAAPL EAGGGREQSR REAAVNLGKM DRGPAQVSGG AATGGVPRNK  120
NGSKIAFKTR SEVDVLDDGY RWRKYGKKMV KNSPNPRNYY RCSSEGCRVK KRVERARDDA  180
RFVVTTYDGV HNHPAPLHLR PQLPPPGGYS IAGAPAVVAP HGRLGLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-26127196877Probable WRKY transcription factor 4
2lex_A3e-26127196877Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1085220.0AK108522.1 Oryza sativa Japonica Group cDNA clone:002-144-B05, full insert sequence.
GenBankAY3418460.0AY341846.1 Oryza sativa (japonica cultivar-group) WRKY5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635031.11e-163WRKY transcription factor SUSIBA2
TrEMBLA0A0D3EQL11e-165A0A0D3EQL1_9ORYZ; Uncharacterized protein
STRINGOBART01G20830.11e-165(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.18e-38WRKY DNA-binding protein 50