PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G20970.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 317aa    MW: 33304 Da    PI: 8.2633
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G20970.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY919.1e-29146205159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dg++WrKYGqK+ kg++ pr+YYrCt a gCpvkk+v+r+++d++v+++tY g Hnh+
  OBART01G20970.1 146 VKDGCQWRKYGQKTAKGNPWPRGYYRCTGApGCPVKKQVQRCNHDTSVLVTTYDGVHNHP 205
                      58**************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.3E-30134205IPR003657WRKY domain
SuperFamilySSF1182903.79E-26139206IPR003657WRKY domain
PROSITE profilePS5081127.209141207IPR003657WRKY domain
SMARTSM007748.9E-35146206IPR003657WRKY domain
PfamPF031064.3E-25147205IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MNTFTLFRDE VQKASEKVHR HHANDDEAGL FLSLGLSLGS SPDACHASKK DEADAGNGGG  60
GDGYLDLALR CDPAAGEPMV HPKRQRATTN SSSSSSICGE YGGAAAAAAV PAGHDDDDRS  120
CMITAASTVN RPGRVVLRTR CSAPTVKDGC QWRKYGQKTA KGNPWPRGYY RCTGAPGCPV  180
KKQVQRCNHD TSVLVTTYDG VHNHPITPYA AALPPSSSSS SAAAAAMLAS SSSSSSTLSE  240
LQRAMSRSIA MPAAQSSSSW WNQRNYPVEA DVVAKAIWDP KFQATVAAAV ASYVRDREQS  300
GAGGRVAGEL FNLAPPC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-24134208275WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033001e-179AP003300.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0700A11.
GenBankAP0034921e-179AP003492.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0712E02.
GenBankAP0149571e-179AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642021.11e-155probable WRKY transcription factor 72
TrEMBLA0A0D3EQM70.0A0A0D3EQM7_9ORYZ; Uncharacterized protein
STRINGOBART01G20970.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143192226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.12e-38WRKY DNA-binding protein 9