PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART01G21400.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

TCP

Protein Properties

Length: 144aa MW: 15572 Da PI: 10.2472

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART01G21400.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	67.9	3.4e-21	1	46	24	69
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssss 69 ++ +caar+F+L++eLG+++d++t++WLlqqa+ ai +tgt+ + OBART01G21400.1 1 MPTLCAARIFQLTRELGHKSDGETVQWLLQQAELAIVTATGTGVGA 46 899***************************************4433 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	5.6E-16	1	42	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	18.91	1	39	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 144 aa Download sequence Send to blast
MPTLCAARIF QLTRELGHKS DGETVQWLLQ QAELAIVTAT GTGVGADIRR TLPLFPKLRP 60 LQVAPPPPPH VGCRRGVRRC HIGFATMFAA HAAAAMPGLE LGLSQDGHIG MLFARSLSQF 120 YHQVGGASAA GQLPHPHHHH QHHQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003253	0.0	AP003253.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0451D05.
GenBank	AP003333	0.0	AP003333.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1103C09.
GenBank	AP014957	0.0	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015638501.2	9e-49	LOW QUALITY PROTEIN: transcription factor TCP20
TrEMBL	A0A0D3EQS6	6e-99	A0A0D3EQS6_9ORYZ; Uncharacterized protein
STRING	OBART01G21400.1	1e-99	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2864	32	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	5e-21	TCP family protein