PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART01G22520.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

CPP

Protein Properties

Length: 397aa MW: 43715.6 Da PI: 7.0823

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART01G22520.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	20.9	7.1e-07	345	366	2	23
TCR 2 ekkgCnCkkskClkkYCeCfaa 23 + kgC C ks C k+YCeC + OBART01G22520.1 345 QVKGCACCKSGCRKLYCECLQV 366 689****************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.40.10	2.1E-4	36	172	IPR013083	Zinc finger, RING/FYVE/PHD-type
Pfam	PF07800	8.4E-64	52	207	IPR012866	Protein of unknown function DUF1644

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
MPKDRSTRAV SYERRRSRVS PYPSNGKGCA RRSEESAAAA AAAAAKQAAE WEDVRCPVCM 60 DHPHNAVLLV CSSHEKGCRP FMCDTSYRHS NCFDQYSKAS KESSKDSGAS AAAAPECSEC 120 QQPIKLSCPL CRGPVSHWTK DYDARKYLNA KVRACTKESC EFRGAYGQLR RHARENHPTV 180 RPTQVDPERQ RDWHRMEQQR DLGDLFSMLR SGLSAREDGI GVSEGEEDIS ERTLHSPSIT 240 MVFIVRTGRS ILHYREAFPG HHRRRTILLL GEAFGRESSP LGGASGSGDG DTTARENDEG 300 DDDVTLSTEA SAGSQHDGEV DGIQLSLLPP FLELQILMVA SVRNQVKGCA CCKSGCRKLY 360 CECLQVTDTD IQRFDDNGDS SGTSGYSSGT IMGQYKL

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

MPKDRSTRAV SYERRRSRVS PYPSNGKGCA RRSEESAAAA AAAAAKQAAE WEDVRCPVCM  60
DHPHNAVLLV CSSHEKGCRP FMCDTSYRHS NCFDQYSKAS KESSKDSGAS AAAAPECSEC  120
QQPIKLSCPL CRGPVSHWTK DYDARKYLNA KVRACTKESC EFRGAYGQLR RHARENHPTV  180
RPTQVDPERQ RDWHRMEQQR DLGDLFSMLR SGLSAREDGI GVSEGEEDIS ERTLHSPSIT  240
MVFIVRTGRS ILHYREAFPG HHRRRTILLL GEAFGRESSP LGGASGSGDG DTTARENDEG  300
DDDVTLSTEA SAGSQHDGEV DGIQLSLLPP FLELQILMVA SVRNQVKGCA CCKSGCRKLY  360
CECLQVTDTD IQRFDDNGDS SGTSGYSSGT IMGQYKL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012609	0.0	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
GenBank	CT829749	0.0	CT829749.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN039I21, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015617030.1	0.0	uncharacterized protein LOC4325319
TrEMBL	A0A0D3ER61	0.0	A0A0D3ER61_9ORYZ; Uncharacterized protein
STRING	OBART01G22520.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8095	2	2