PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART01G22530.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LSD

Protein Properties

Length: 1413aa MW: 147035 Da PI: 3.731

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART01G22530.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	34.3	3.8e-11	1323	1347	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr+lL+Y+rGA +V+C++C+t+ OBART01G22530.1 1323 CGSCRILLAYFRGAGYVHCTCCQTM 1347 ***********************96 PP
2	zf-LSD1	40.5	4.5e-13	1361	1385	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C tlL+YP+GAp+V+C+lC +V OBART01G22530.1 1361 CGHCATLLMYPFGAPAVKCSLCLFV 1385 **********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	1.4E-10	1320	1350	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.9E-7	1323	1346	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	4.4E-8	1359	1386	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.5E-10	1361	1385	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 1413 aa Download sequence Send to blast
MPPRSRRRLQ VRPPTGWPRA EEPQPPIGGT PGAAGPPAPP SFFPSLELGT SAAPPALEAA 60 AAGAGQPGSP SPCPPAEPAA EFYPGSAASS PSSSSYETAE DDSPASPPPT PPPLVLCASP 120 DSSYTESSPA RDRFGDEEGS HAAPELPPPP TPLEGGPDAS SAEPAAMASR AREPMGSRTA 180 PEPPTPPLES GQEGFQQQQP HPPPTTHPEC DSSEPAELPL PPTSPAEIAY TSPDSVEVDV 240 VAVLPEEAPG STVAMEVMYG ETDTSAVSVS PVLGSAETDA AEIDVIAGMQ EEAPGSTVAM 300 EVMYRENDTA AVSVSPVLES REPDVAEGDV VAGVQEAHGS KFSMEVMYRE TDAAAVSVSP 360 VLESGEPDKA ENDAVEEMQE EAHGSRFAME ATYGEPDASA VSVSPVLESV EPDVTEIDVV 420 SEIQEEAPDS TLAMEVTSGE TDTAAVSTFP VLDGGDPDAA EKNVVAGMQE EEAPDSMLAI 480 EVTSGETDTA AVSVSPVLEG VDPDAAEIDV VAGMQEEAPG STLAMEVTYR ETDATAASVS 540 PVLDSGDPDA AEVDVVVGMQ EQAAGSALAM LVTYGETDTS AVSVSPVLES GEPDAAQIDV 600 VAGMQEEAPA SMLAMEVTYR EVDAATVSVS PVLESVEPDA AKIDVVARMQ EEAPGSKLAM 660 EVMYGETGTA AVSVPLVLES REEGSLQESM QRPSSPTMNI EQESMQRPFS PTIGTETSSP 720 EMAPAGSENC KVSWLPLPPP TPLGESMPSL PVAAAPKVLL VMPEEAVESV PSSEALDAEK 780 PASITQAEPS SPNTPPPGFE NFKSSWLPLP TTPPPVETTD VLPDVVVTKA VEAPIEEVSR 840 PLPALEVTNM ESDTVLSILP TTVLPTEGTE GLLQQPLLRP PSPVVQSEPC LQNEMAPPGF 900 ENFKSSSEPC SAEEIAPPGS DNFKSSSEPC LPEEMAPPGF ENFKSSSEPC SQEEMAPPGF 960 ENFKSSWPPL PTLPQTVPDA AAADALAATV EEAAGPPPAL ELEAMDVDMD AIHPPPLPFD 1020 SGVESSQKPL PRAPSPIMQE APCSPDRAPP GFETYKSSQL LLPSPSLAQT TNVRQDQSVT 1080 EPVSVIEEAP QLLHSVEVMG VHMDAVPPLL PSSESGADGL SPQQFAQPPP AEKDTTTCLP 1140 DMVHSGCDNS EPSQLLSLPA VISPVQTPDG LADVPAIDRV AVALEESPQR PLVSGEMEAG 1200 TVPIRSSPLK NISEGSLPQL ESESHSPTSQ AADSLLDASD SKSVAVASEE MSQLPLASQA 1260 TTTDLVSTTA MQPQSEGIVD ESLQPQHPPS STAHDSPCLQ DSVPLVPPPP SPYLNKEVGQ 1320 MVCGSCRILL AYFRGAGYVH CTCCQTMNYV LEAHEVGKVH CGHCATLLMY PFGAPAVKCS 1380 LCLFVTEIGE RNVRRRLSIE QPTRTNSSGL AEA

Sequence ? help Back to Top

Protein Sequence Length: 1413 aa Download sequence Send to blast

MPPRSRRRLQ VRPPTGWPRA EEPQPPIGGT PGAAGPPAPP SFFPSLELGT SAAPPALEAA  60
AAGAGQPGSP SPCPPAEPAA EFYPGSAASS PSSSSYETAE DDSPASPPPT PPPLVLCASP  120
DSSYTESSPA RDRFGDEEGS HAAPELPPPP TPLEGGPDAS SAEPAAMASR AREPMGSRTA  180
PEPPTPPLES GQEGFQQQQP HPPPTTHPEC DSSEPAELPL PPTSPAEIAY TSPDSVEVDV  240
VAVLPEEAPG STVAMEVMYG ETDTSAVSVS PVLGSAETDA AEIDVIAGMQ EEAPGSTVAM  300
EVMYRENDTA AVSVSPVLES REPDVAEGDV VAGVQEAHGS KFSMEVMYRE TDAAAVSVSP  360
VLESGEPDKA ENDAVEEMQE EAHGSRFAME ATYGEPDASA VSVSPVLESV EPDVTEIDVV  420
SEIQEEAPDS TLAMEVTSGE TDTAAVSTFP VLDGGDPDAA EKNVVAGMQE EEAPDSMLAI  480
EVTSGETDTA AVSVSPVLEG VDPDAAEIDV VAGMQEEAPG STLAMEVTYR ETDATAASVS  540
PVLDSGDPDA AEVDVVVGMQ EQAAGSALAM LVTYGETDTS AVSVSPVLES GEPDAAQIDV  600
VAGMQEEAPA SMLAMEVTYR EVDAATVSVS PVLESVEPDA AKIDVVARMQ EEAPGSKLAM  660
EVMYGETGTA AVSVPLVLES REEGSLQESM QRPSSPTMNI EQESMQRPFS PTIGTETSSP  720
EMAPAGSENC KVSWLPLPPP TPLGESMPSL PVAAAPKVLL VMPEEAVESV PSSEALDAEK  780
PASITQAEPS SPNTPPPGFE NFKSSWLPLP TTPPPVETTD VLPDVVVTKA VEAPIEEVSR  840
PLPALEVTNM ESDTVLSILP TTVLPTEGTE GLLQQPLLRP PSPVVQSEPC LQNEMAPPGF  900
ENFKSSSEPC SAEEIAPPGS DNFKSSSEPC LPEEMAPPGF ENFKSSSEPC SQEEMAPPGF  960
ENFKSSWPPL PTLPQTVPDA AAADALAATV EEAAGPPPAL ELEAMDVDMD AIHPPPLPFD  1020
SGVESSQKPL PRAPSPIMQE APCSPDRAPP GFETYKSSQL LLPSPSLAQT TNVRQDQSVT  1080
EPVSVIEEAP QLLHSVEVMG VHMDAVPPLL PSSESGADGL SPQQFAQPPP AEKDTTTCLP  1140
DMVHSGCDNS EPSQLLSLPA VISPVQTPDG LADVPAIDRV AVALEESPQR PLVSGEMEAG  1200
TVPIRSSPLK NISEGSLPQL ESESHSPTSQ AADSLLDASD SKSVAVASEE MSQLPLASQA  1260
TTTDLVSTTA MQPQSEGIVD ESLQPQHPPS STAHDSPCLQ DSVPLVPPPP SPYLNKEVGQ  1320
MVCGSCRILL AYFRGAGYVH CTCCQTMNYV LEAHEVGKVH CGHCATLLMY PFGAPAVKCS  1380
LCLFVTEIGE RNVRRRLSIE QPTRTNSSGL AEA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	5	12	RRRLQVRP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP002866	0.0	AP002866.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0410E01.
GenBank	AP003314	0.0	AP003314.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0046B10.
GenBank	AP014957	0.0	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015621461.1	0.0	protein LOL5
TrEMBL	A0A0D3ER62	0.0	A0A0D3ER62_9ORYZ; Uncharacterized protein
STRING	OBART01G22530.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13395	25	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	3e-29	lsd one like 2