PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G22980.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 78aa    MW: 8898.85 Da    PI: 6.2438
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G22980.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.93.6e-113371444
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44
                     +T+eE++l  + +++ G++ W++Ia +++ gRt+k++  +w
  OBART01G22980.1 33 FTEEEEDLVFRMHRLVGNR-WELIAGRIP-GRTAKEVEMFW 71
                     9******************.*********.******98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.3062578IPR017930Myb domain
SMARTSM007172.1E-82977IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-133271IPR009057Homeodomain-like
SuperFamilySSF466891.72E-93272IPR009057Homeodomain-like
PfamPF002492.8E-103371IPR001005SANT/Myb domain
CDDcd001674.52E-93371No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048765Biological Processroot hair cell differentiation
GO:1900033Biological Processnegative regulation of trichome patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 78 aa     Download sequence    Send to blast
MDSSSGSQGK NSKTSDGCET KEVNNTAQNF VHFTEEEEDL VFRMHRLVGN RWELIAGRIP  60
GRTAKEVEMF WAVKHQNT
Functional Description ? help Back to Top
Source Description
UniProtMYB-type transcription factor involved in trichome cell specification. Acts as a negative regulator of trichome patterning and formation. May function by suppressing the expression of GL3. {ECO:0000269|PubMed:22168948}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8334471e-130CT833447.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA029N02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006644378.12e-44PREDICTED: MYB-like transcription factor ETC3
SwissprotB3H4X84e-20TCL2_ARATH; MYB-like transcription factor TCL2
TrEMBLA0A0D3ERB62e-51A0A0D3ERB6_9ORYZ; Uncharacterized protein
TrEMBLA2WSP82e-51A2WSP8_ORYSI; Uncharacterized protein
TrEMBLA2ZVH22e-51A2ZVH2_ORYSJ; Uncharacterized protein
STRINGOBART01G22980.13e-52(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52753157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01060.17e-23CAPRICE-like MYB3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Huang M,Hu Y,Liu X,Li Y,Hou X
    Arabidopsis LEAFY COTYLEDON1 controls cell fate determination during post-embryonic development.
    Front Plant Sci, 2015. 6: p. 955
    [PMID:26579186]