PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART01G23380.2

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 381aa MW: 40031.1 Da PI: 7.0634

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART01G23380.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102	3.4e-32	205	262	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt+++C vkk+vers +dp++v++tYeg+H+h+ OBART01G23380.2 205 EDGYRWRKYGQKAVKNSPYPRSYYRCTTPKCGVKKRVERSYQDPSTVITTYEGQHTHH 262 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.1E-34	189	264	IPR003657	WRKY domain
SuperFamily	SSF118290	8.11E-29	197	264	IPR003657	WRKY domain
PROSITE profile	PS50811	31.066	199	264	IPR003657	WRKY domain
SMART	SM00774	1.6E-37	204	263	IPR003657	WRKY domain
Pfam	PF03106	2.3E-25	205	262	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence Send to blast
MSSGGGGGGG GDRHGPYHQH GHLGRGEGAD YVYSSSDMES FFFSQPGGVG IGGGGGGVVG 60 AGGADEIMPY SSITDYLQGL LDPSGLARHL DVACPSSQDT AVKQELSVDV TSHDSQGTGG 120 VTGEGVAQAT PNSSASFSSS DGEAEGGKSS RRCKKGQAKA EEEDDKDEED GENSKKPNKP 180 KKKAEKRQRQ PRVAFLTKSE VDHLEDGYRW RKYGQKAVKN SPYPRSYYRC TTPKCGVKKR 240 VERSYQDPST VITTYEGQHT HHSPASLRGG GGGVGIVGGH HHHHLFMPGV HGLPPSHLMP 300 AGFHPELMGL MHHHQAMAAA AAAANPSMYF PGVAASAPPP PAVAGGGAMP PNDHPPLQQH 360 HFTDYALLQD LFPSTMPSSN P

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence Send to blast

MSSGGGGGGG GDRHGPYHQH GHLGRGEGAD YVYSSSDMES FFFSQPGGVG IGGGGGGVVG  60
AGGADEIMPY SSITDYLQGL LDPSGLARHL DVACPSSQDT AVKQELSVDV TSHDSQGTGG  120
VTGEGVAQAT PNSSASFSSS DGEAEGGKSS RRCKKGQAKA EEEDDKDEED GENSKKPNKP  180
KKKAEKRQRQ PRVAFLTKSE VDHLEDGYRW RKYGQKAVKN SPYPRSYYRC TTPKCGVKKR  240
VERSYQDPST VITTYEGQHT HHSPASLRGG GGGVGIVGGH HHHHLFMPGV HGLPPSHLMP  300
AGFHPELMGL MHHHQAMAAA AAAANPSMYF PGVAASAPPP PAVAGGGAMP PNDHPPLQQH  360
HFTDYALLQD LFPSTMPSSN P

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	5e-29	197	265	10	78	Probable WRKY transcription factor 4
2lex_A	5e-29	197	265	10	78	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK108745	0.0	AK108745.1 Oryza sativa Japonica Group cDNA clone:002-150-E09, full insert sequence.
GenBank	AY341856	0.0	AY341856.1 Oryza sativa (japonica cultivar-group) WRKY16 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015626307.1	0.0	WRKY transcription factor 71
Swissprot	Q8VWJ2	2e-48	WRK28_ARATH; WRKY transcription factor 28
TrEMBL	A0A0D3ERF9	0.0	A0A0D3ERF9_9ORYZ; Uncharacterized protein
STRING	OBART01G23380.1	0.0	(Oryza barthii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29860.1	6e-42	WRKY DNA-binding protein 71

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kim SH, et al. Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis. Mol. Cells, 2014. 37(11): p. 833-40 [PMID:25358503] Zhao L, et al. KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535 [PMID:29288215]