PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G25510.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 242aa    MW: 25001.9 Da    PI: 7.3144
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G25510.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.52.5e-20124158135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C+nC tt+TplWR+gp+g+k+LCnaCG++y+k+++
  OBART01G25510.1 124 CANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEER 158
                      ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577167.13E-15117159No hitNo description
SMARTSM004014.4E-21118175IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.3E-17118158IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011414.404118154IPR000679Zinc finger, GATA-type
CDDcd002021.07E-13123155No hitNo description
PfamPF003205.5E-18124158IPR000679Zinc finger, GATA-type
PROSITE patternPS003440124149IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MLHEAAPCTC GLLYGSCGGG CSLLFPAGAP GDHHHHHYYK QYRGAGDGEY PDVPYGGGGS  60
VDCTLSLGTP STRRAEAAVA GLPWDQSSLQ PSCNGRQEMS GAAAPRTEPS GGAGAAAASA  120
PRRCANCDTT STPLWRNGPR GPKSLCNACG IRYKKEERRA AAAAVAPTAL ASDGGVEYAY  180
GYPRQQQQWG CYGPAVAKAA SFGMFGDAAG EDGPCLPWGL GVMPSSPAFG AVREMPSLFQ  240
YY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00110ampDAPTransfer from AT2G18380Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032840.0AP003284.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0671D01.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638887.11e-173GATA transcription factor 20
TrEMBLA0A0D3ES501e-174A0A0D3ES50_9ORYZ; Uncharacterized protein
STRINGOBART01G25510.11e-174(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18380.11e-26GATA transcription factor 20