PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G25780.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 249aa    MW: 27512.6 Da    PI: 5.3952
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G25780.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM62.41.4e-19271627128
              NAM   7 FhPtdeelvveyLkkkvegkk......lelee...vikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratk..sgyW 83 
                       hP+++el+  yL+++v + +          +   +i+e+d+y+++P dL +      + +++++ wyfFs  +    +g rk r+++  +g W
  OBART01G25780.1  27 VHPSEQELIETYLRPRVVSGDkpppssS---ScgfIIHEADVYSADPADLTRgfapavARSSGDEAWYFFSAVRGL--KGGRKARTVDdgAGCW 115
                      69*************9877765766543...14437**************8557777544558889*****98775..588999976644788* PP

              NAM  84 katgkdkevlsk.kgelvglkktLvfykg.rapkgektdWvmheyrl 128
                      ++    k+vl++ +g+  g ++++ f ++ ++ + +++ W+m e +l
  OBART01G25780.1 116 HSEAGAKPVLAAsSGRRLGHRQSFSFITKdDDGQRVRSGWLMVELSL 162
                      *9999999998868889**********5436667789*****99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100527.91521178IPR003441NAC domain
SuperFamilySSF1019411.57E-2627175IPR003441NAC domain
PfamPF023653.0E-1327161IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MGAASRPRRQ CRAPRRLDGG GGGSMDVHPS EQELIETYLR PRVVSGDKPP PSSSSCGFII  60
HEADVYSADP ADLTRGFAPA VARSSGDEAW YFFSAVRGLK GGRKARTVDD GAGCWHSEAG  120
AKPVLAASSG RRLGHRQSFS FITKDDDGQR VRSGWLMVEL SLDVDEEEQL VLSKLIDMPE  180
IREFIMRGSY LGGGPAPPRY ECDHPAMVMT GGDDQQQLDE QRRDDVGDDR AHYDRVDGQL  240
QFERHYLQM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638896.11e-106uncharacterized protein LOC107276912
TrEMBLA0A0D3ES840.0A0A0D3ES84_9ORYZ; Uncharacterized protein
STRINGOBART01G25780.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40112972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.11e-11NAC domain containing protein 2