PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G26520.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family E2F/DP
Protein Properties Length: 290aa    MW: 32325 Da    PI: 10.3888
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G26520.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP702.9e-2298174371
          E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse...........dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                      +++Lr +++    + +k+e+ g++t+neva+e+ +e           d+kn+rRR+YD++NVL a+++i+k +k+ei+w+g
  OBART01G26520.1  98 GWGLREFSKI---VSKKVEAkGRTTYNEVADEIFAElksitqnglefDEKNIRRRVYDAFNVLIAIRVIAK-DKKEIKWMG 174
                      689*******...99999999**************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094044.9E-901287IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.107.4E-3694179IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.6E-2496174IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.17E-1699175IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023197.5E-1899174IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd144581.37E-25179276IPR014889Transcription factor DP, C-terminal
SMARTSM011381.0E-18181286IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.62E-27181279No hitNo description
PfamPF087811.5E-19182277IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MAPPCGDAAA AASAAPGLAN LLIREGAGLP SRPERYPPFR PCTSDSFAPI SREGDDIPPQ  60
KKSVSLRSGG GGNAAEREEG GANRNGKKEK AGAQRITGWG LREFSKIVSK KVEAKGRTTY  120
NEVADEIFAE LKSITQNGLE FDEKNIRRRV YDAFNVLIAI RVIAKDKKEI KWMGLTNYRY  180
EKIQKLEEVH KELITRIKNK KKLLQEIEKQ NITLRNQASQ RPAESVNGIL LPFLLIKTSR  240
KARVEIEISE DSKFARFDFN GAPFTMHDDV SILEAIRRNN KGRAGLSIHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B3e-2398175989PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2245290.0AY224529.1 Oryza sativa (japonica cultivar-group) isolate 21044 DP protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631684.10.0transcription factor-like protein DPB isoform X1
TrEMBLA0A0D3ESH20.0A0A0D3ESH2_9ORYZ; Uncharacterized protein
STRINGOBART01G26520.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.14e-52Transcription factor DP