PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G27550.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 210aa    MW: 22386.7 Da    PI: 4.6556
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G27550.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.39.6e-151555648
                     HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  OBART01G27550.1 15 DDEEDLILRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 55
                     58***************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.94E-13163IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.8E-23160IPR009057Homeodomain-like
PROSITE profilePS5129424.805559IPR017930Myb domain
SMARTSM007172.9E-13957IPR001005SANT/Myb domain
CDDcd001676.73E-121555No hitNo description
PfamPF002492.7E-131655IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0048354Biological Processmucilage biosynthetic process involved in seed coat development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MNYLRPDIKR CPIADDEEDL ILRLHRLLGN RWSLIAGRLP GRTDNEIKNY WNSHLSKKLI  60
AQGIDPRTHK PLTAAADHSN AAAAVAATSY KKAVPAKPPR TASSPAAGIE CSDDRARPAD  120
GGGDFAAMVS AADAEGFEGG FGDQFCAEDA VHGGFDMGSA SAMVGDDDFS SFLDSLINDE  180
HLGDLFVVEG NDHEHGNGEI GHGDVMESKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-1425951108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1082590.0AK108259.1 Oryza sativa Japonica Group cDNA clone:002-141-A12, full insert sequence.
GenBankD886200.0D88620.1 Oryza sativa mRNA for OSMYB4, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644524.11e-152transcription repressor MYB5
TrEMBLA0A0D3ESV51e-152A0A0D3ESV5_9ORYZ; Uncharacterized protein
STRINGOBART01G27550.11e-153(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.14e-39myb domain protein 5