PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G28780.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 239aa    MW: 25250 Da    PI: 8.2945
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G28780.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.24.4e-30153211159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYG+K+vk+s++pr+YYrC+++gC+vkk+ver+++dp++v+++Yeg Hnh 
  OBART01G28780.1 153 LDDGYKWRKYGKKSVKNSPNPRNYYRCSTEGCNVKKRVERDKNDPRYVVTMYEGIHNHV 211
                      59********************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-31140211IPR003657WRKY domain
SuperFamilySSF1182901.31E-26146212IPR003657WRKY domain
PROSITE profilePS5081131.158148213IPR003657WRKY domain
SMARTSM007748.2E-33153212IPR003657WRKY domain
PfamPF031061.3E-23154210IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MAAAAAGAST PFNFCRHGSH AEYDAVFSGS WMARRPSAAP HGGGASGSGY GAASYVAPTF  60
GAAFRQQHLD LLDYLSDDQG VPAPPPAAVP SASYVTPAPA MAPAEPVVPD AVAAAGGYPR  120
SVAAAAAAVA GEGRDRTTTD KIAFRTRSDD EILDDGYKWR KYGKKSVKNS PNPRNYYRCS  180
TEGCNVKKRV ERDKNDPRYV VTMYEGIHNH VCPGTVYYAA QDAASGRFFV AGISHPDLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-24143213777Probable WRKY transcription factor 4
2lex_A5e-24143213777Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1085550.0AK108555.1 Oryza sativa Japonica Group cDNA clone:002-144-E10, full insert sequence.
GenBankAY8706090.0AY870609.1 Oryza sativa (japonica cultivar-group) WRKY26 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635650.11e-119WRKY transcription factor WRKY24
TrEMBLA0A0D3ETA21e-173A0A0D3ETA2_9ORYZ; Uncharacterized protein
STRINGOBART01G28750.11e-174(Oryza barthii)
STRINGOBART01G28780.11e-174(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.11e-35WRKY DNA-binding protein 51